View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10698_low_26 (Length: 296)
Name: NF10698_low_26
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10698_low_26 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 4 - 290
Target Start/End: Original strand, 39704447 - 39704733
Alignment:
| Q |
4 |
gcaacgatttcaatgcttataggaattgctttttatttgagcactgctttaattgaccaagttcgtaggagtactgattggttacctgatgaaataaatc |
103 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39704447 |
gcaatgatttcaatgcttataggtattgctttttatttgagcactgctttaattgaccaagttcgtaggagtactgattggttacctgatgaaataaatc |
39704546 |
T |
|
| Q |
104 |
atggcaaggttgataatgtgtattggatgttggtcgtgtttggagctatcaactttgtgtattacttactgtgctctatttcttacaagtatgaaaatgt |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39704547 |
atggcaaggttgataatgtgtattggatgttggtcatgtttggagctatcaactttgtgtattacttactgtgctctatttcttacaagtatgaaaatgt |
39704646 |
T |
|
| Q |
204 |
ttacgaggttatgatgttatgatgaatgttatctgtgtttggttggaataataataagtgataatgataatatgatcttcttctctc |
290 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39704647 |
ttaagaggttatgatgttatgatgaatgttatctgtgtttggttggaataataataagtgataatgataatatgatcttcttctctc |
39704733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 39695535 - 39695740
Alignment:
| Q |
1 |
acagcaacgatttcaatgcttataggaattgctttttatttgagcactgctttaattgaccaagttcgtaggagtactgattggttacctgatgaaataa |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39695535 |
acagcaatgatttcaatgcttataggaattgctttttatttgagcactgctttaattgaccaagttcgtaggagtactgattggttacctgatgaaataa |
39695634 |
T |
|
| Q |
101 |
atcatggcaaggttgataatgtgtattggatgttggtcgtgtttggagctatcaactttgtgtattacttactgtgctctatttcttacaagtatgaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
39695635 |
atcatggcaaggttgataatgtgtattggatgttagtagtgtttggaggtatcaactttgtgtattacctattgtgctctatttcttacaagtatgaaaa |
39695734 |
T |
|
| Q |
201 |
tgttta |
206 |
Q |
| |
|
|||||| |
|
|
| T |
39695735 |
tgttta |
39695740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 4 - 198
Target Start/End: Complemental strand, 39934575 - 39934381
Alignment:
| Q |
4 |
gcaacgatttcaatgcttataggaattgctttttatttgagcactgctttaattgaccaagttcgtaggagtactgattggttacctgatgaaataaatc |
103 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39934575 |
gcaatgatttcaatgcttataggaattgctttttacttgagcactgctttaattgaccaagttcgtaggagtactgattggttacctgatgaaataaatc |
39934476 |
T |
|
| Q |
104 |
atggcaaggttgataatgtgtattggatgttggtcgtgtttggagctatcaactttgtgtattacttactgtgctctatttcttacaagtatgaa |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
39934475 |
atggcaaggttgataatgtgtattggatgttagtcgtgtttggagctatcaactttgtgtattatttactgtgctctatttcttacaaatatgaa |
39934381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 4 - 236
Target Start/End: Complemental strand, 39928928 - 39928696
Alignment:
| Q |
4 |
gcaacgatttcaatgcttataggaattgctttttatttgagcactgctttaattgaccaagttcgtaggagtactgattggttacctgatgaaataaatc |
103 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||| |||||| ||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39928928 |
gcaacggtttcaatgcttataggggttgctttttacatgagcaatgcattaattgatcaagttcgtaggagtactgattggttacctgatgacataaatc |
39928829 |
T |
|
| Q |
104 |
atggcaaggttgataatgtgtattggatgttggtcgtgtttggagctatcaactttgtgtattacttactgtgctctatttcttacaagtatgaaaatgt |
203 |
Q |
| |
|
|||| ||| |||| |||||||| |||||||| ||| | | || | ||| |||||||||||||||||| | || ||| | ||||||||||||||||||| |
|
|
| T |
39928828 |
atgggaagattgacaatgtgtactggatgttagtcctactcgggggtataaactttgtgtattacttattttgttcttctccttacaagtatgaaaatgt |
39928729 |
T |
|
| Q |
204 |
ttacgaggttatgatgttatgatgaatgttatc |
236 |
Q |
| |
|
||| |||| | |||||||||||| ||||||||| |
|
|
| T |
39928728 |
ttaagaggatgtgatgttatgataaatgttatc |
39928696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 236
Target Start/End: Complemental strand, 38059047 - 38058936
Alignment:
| Q |
125 |
attggatgttggtcgtgtttggagctatcaactttgtgtattacttactgtgctctatttcttacaagtatgaaaatgtttacgaggttatgatgttatg |
224 |
Q |
| |
|
||||||||||||| || ||||| | |||||||||| |||||||||| | || ||| | |||||||||||||||||| || |||| | | |||||||| |
|
|
| T |
38059047 |
attggatgttggttgtatttgggggtatcaactttaggtattacttattttgttcttctgtttacaagtatgaaaatgtgtaagaggatgtaatgttatg |
38058948 |
T |
|
| Q |
225 |
atgaatgttatc |
236 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
38058947 |
ataaatgttatc |
38058936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 38059126 - 38059050
Alignment:
| Q |
31 |
gctttttatttgagcactgctttaattgaccaagttcgtaggagtactgattggttacctgatgaaataaatcatgg |
107 |
Q |
| |
|
|||||| | ||||||||| ||||| |||||||| | | ||||| |||| |||||||||| ||||| ||||||||||| |
|
|
| T |
38059126 |
gcttttaacttgagcactactttagttgaccaaatccataggattactaattggttaccagatgacataaatcatgg |
38059050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University