View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10698_low_27 (Length: 280)
Name: NF10698_low_27
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10698_low_27 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 150 - 274
Target Start/End: Complemental strand, 52491406 - 52491282
Alignment:
| Q |
150 |
cgtgagtagaacaacaacaattgcagcacttcgttccattatccttcaatttatttccttcttcaatttcaattccaaccctaattgcaacacaacaaca |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
52491406 |
cgtgagtagaacaacaacaattgcagcacttcgttccattatccttcaatttatttccttcttcaatttcaattccaaccctaattgcagcacaacaaca |
52491307 |
T |
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| Q |
250 |
ccctgttttccttcttctctgcttc |
274 |
Q |
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| T |
52491306 |
ccctgttttccttcttctttgcttc |
52491282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 10447143 - 10447180
Alignment:
| Q |
18 |
aatgcatacgtggcacgccacgtatgtaattattgaat |
55 |
Q |
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| T |
10447143 |
aatgcctacgtggcacgccacgtgtgtaattattgaat |
10447180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 274
Target Start/End: Original strand, 21946016 - 21946150
Alignment:
| Q |
152 |
tgagtagaacaacaacaattgcagcacttc---gttccattatccttca-------atttatttccttcttcaatttcaattccaaccctaattgca--a |
239 |
Q |
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| T |
21946016 |
tgagtagaacaacaacaattgcagcacttccaggttccattatccttcaaatttcaatttatttccttctttaatttcaattccaaccccaattgcagta |
21946115 |
T |
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| Q |
240 |
c-acaacaacaccctgttttccttcttctctgcttc |
274 |
Q |
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| T |
21946116 |
caacaacaacaccttgtttt-cttcttctttgcttc |
21946150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 36337331 - 36337278
Alignment:
| Q |
182 |
gttccattatccttcaatttatttccttcttcaatttcaattccaaccctaatt |
235 |
Q |
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| T |
36337331 |
gttccattattcttcaatttatttccttcttcaatttcaattccagccccaatt |
36337278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 30927371 - 30927320
Alignment:
| Q |
150 |
cgtgagtagaacaacaacaattgcagcacttc---gttccattatccttcaa |
198 |
Q |
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| T |
30927371 |
cgtgagcagaacaacaacaattgcagcacttccaggttccattatccttcaa |
30927320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 43298 - 43242
Alignment:
| Q |
156 |
tagaacaacaacaattgcagcacttcgttccattatccttcaatttatttccttcttca |
214 |
Q |
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| T |
43298 |
tagaacaacaacaatttcagcaag--gttccattattcttcaatttatttccttcttca |
43242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 27444063 - 27444119
Alignment:
| Q |
156 |
tagaacaacaacaattgcagcacttcgttccattatccttcaatttatttccttcttca |
214 |
Q |
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| T |
27444063 |
tagaacaacaacaatttcagcaag--gttccattattcttcaatttatttccttcttca |
27444119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 34351624 - 34351661
Alignment:
| Q |
18 |
aatgcatacgtggcacgccacgtatgtaattattgaat |
55 |
Q |
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| T |
34351624 |
aatgcctacgtggcacgccacgtgtgtaattattgaat |
34351661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 7899847 - 7899814
Alignment:
| Q |
18 |
aatgcatacgtggcacgccacgtatgtaattatt |
51 |
Q |
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||||||||||||||||||||||| |||||||||| |
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| T |
7899847 |
aatgcatacgtggcacgccacgtgtgtaattatt |
7899814 |
T |
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