View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10698_low_30 (Length: 261)

Name: NF10698_low_30
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10698_low_30
NF10698_low_30
[»] chr8 (1 HSPs)
chr8 (19-249)||(14260987-14261217)
[»] chr7 (3 HSPs)
chr7 (46-249)||(10575384-10575587)
chr7 (57-237)||(39954838-39955018)
chr7 (100-195)||(354456-354551)
[»] chr3 (7 HSPs)
chr3 (46-189)||(21584579-21584722)
chr3 (49-250)||(24982042-24982243)
chr3 (49-249)||(25085035-25085235)
chr3 (49-250)||(24497244-24497445)
chr3 (39-250)||(24923435-24923646)
chr3 (40-249)||(31825533-31825742)
chr3 (38-250)||(24919860-24920072)
[»] chr2 (2 HSPs)
chr2 (76-246)||(41027572-41027742)
chr2 (77-162)||(30012097-30012182)
[»] chr4 (2 HSPs)
chr4 (80-246)||(22898553-22898719)
chr4 (80-246)||(22950221-22950387)
[»] chr5 (1 HSPs)
chr5 (77-210)||(26358561-26358694)


Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 14260987 - 14261217
Alignment:
Q  19 aaccataaccctaaatcaacttcttcatcatcttcttcaacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14260987 aaccataaccctaaatcaacttcttcatcatcttcttcaacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagca 14261086  T
Q  119 gtaaccgtcttcctcctcgcatgttcagtatacgtaacagcatctcttatcacattctccaagaatatcttcaacacaccgcgagtttcttcgtaaatca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  14261087 gtaaccgtcttcctcctcgcatgttcagtatacgtaacagcatctcttatcacattctccaagaaaatcttcaacacaccgcgagtttcttcataaatca 14261186  T
Q  219 acccgctaattctcttcactcctcctcttct 249  Q
    ||||||| ||||||||||| |||||||||||    
T  14261187 acccgctgattctcttcacacctcctcttct 14261217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 9e-45; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 46 - 249
Target Start/End: Complemental strand, 10575587 - 10575384
Alignment:
Q  46 tcatcttcttcaacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttca 145  Q
    ||||| ||||||||| ||||||||||| |  || |||||||||||||| | ||| |||||||||||||||||||| || || |||||||||||||| |||    
T  10575587 tcatcatcttcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtcacagttttcctcctcgcatgctca 10575488  T
Q  146 gtatacgtaacagcatctcttatcacattctccaagaatatcttcaacacaccgcgagtttcttcgtaaatcaacccgctaattctcttcactcctcctc 245  Q
    || || ||||||||||||||||| |||||||||||||| |||||||||||||| |  ||||| || || ||||| || || ||||| ||||| |||||||    
T  10575487 gtgtaagtaacagcatctcttataacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattcttttcacacctcctc 10575388  T
Q  246 ttct 249  Q
    ||||    
T  10575387 ttct 10575384  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 237
Target Start/End: Original strand, 39954838 - 39955018
Alignment:
Q  57 aacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatacgtaac 156  Q
    |||| |||||||| || | ||||||||| || ||||| |  ||||| ||||||||||| || ||||| || |||||||| ||||| ||||| || |||||    
T  39954838 aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 39954937  T
Q  157 agcatctcttatcacattctccaagaatatcttcaacacaccgcgagtttcttcgtaaatcaacccgctaattctcttcac 237  Q
    |||||| |  ||||||||||| |  || ||||| |  ||||||||||| |||||||| || |  ||||| |||||||||||    
T  39954938 agcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctgattctcttcac 39955018  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 195
Target Start/End: Complemental strand, 354551 - 354456
Alignment:
Q  100 ataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatacgtaacagcatctcttatcacattctccaagaatatcttcaacac 195  Q
    ||||||||||||||||||||| |  ||||||||||| ||||| ||||| || ||||||||||| |  ||| |||||| |||||| |||||||||||    
T  354551 ataaacaacatccatagcagtcagagtcttcctccttgcatgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacac 354456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 46 - 189
Target Start/End: Original strand, 21584579 - 21584722
Alignment:
Q  46 tcatcttcttcaacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttca 145  Q
    ||||||||||||||||||||| ||||| |  || |||||||| |||||||| ||||||||||||||||||||||| || ||||||||||| ||||| |||    
T  21584579 tcatcttcttcaacctccgaatccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctccttgcatgctca 21584678  T
Q  146 gtatacgtaacagcatctcttatcacattctccaagaatatctt 189  Q
    || |||||||| ||||| |  ||||||||||||||||| |||||    
T  21584679 gtgtacgtaaccgcatcacgaatcacattctccaagaaaatctt 21584722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 49 - 250
Target Start/End: Complemental strand, 24982243 - 24982042
Alignment:
Q  49 tcttcttcaacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagta 148  Q
    |||||||||||| ||||||||||| |  || ||||||||||||||||| ||||| ||||||||||| || ||||| ||||||||||| || || |||||     
T  24982243 tcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtg 24982144  T
Q  149 tacgtaacagcatctcttatcacattctccaagaatatcttcaacacaccgcgagtttcttcgtaaatcaacccgctaattctcttcactcctcctcttc 248  Q
    || ||||| ||||| |  || |||||||||||||| |||||||| ||||| |  |||||||| || ||||| || || |||||||| || || |||||||    
T  24982143 tatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttaacaccacctcttc 24982044  T
Q  249 tt 250  Q
    ||    
T  24982043 tt 24982042  T

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Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 49 - 249
Target Start/End: Complemental strand, 25085235 - 25085035
Alignment:
Q  49 tcttcttcaacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagta 148  Q
    ||||||||||||||| |||||||| |  || ||||| ||||||||||| ||||| ||||||||||| || || || ||||||||||| || || |||||     
T  25085235 tcttcttcaacctccaaaaccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtg 25085136  T
Q  149 tacgtaacagcatctcttatcacattctccaagaatatcttcaacacaccgcgagtttcttcgtaaatcaacccgctaattctcttcactcctcctcttc 248  Q
    || ||||| ||||| |  ||||||||||||||||| |||||||| ||||| |  |||||||| || ||||| || || ||||||||||| || |||||||    
T  25085135 tatgtaactgcatcacggatcacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttcacaccacctcttc 25085036  T
Q  249 t 249  Q
    |    
T  25085035 t 25085035  T

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Target: chr3; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 49 - 250
Target Start/End: Original strand, 24497244 - 24497445
Alignment:
Q  49 tcttcttcaacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagta 148  Q
    ||||| ||||||||| |||||||| |  || ||||||||||||||||| ||||| ||||||||||| || || || ||||||||||| || || |||||     
T  24497244 tcttcatcaacctccaaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtg 24497343  T
Q  149 tacgtaacagcatctcttatcacattctccaagaatatcttcaacacaccgcgagtttcttcgtaaatcaacccgctaattctcttcactcctcctcttc 248  Q
    || ||||| ||||| |  |||||||| |||||||| |||||||| ||||| |  |||||||| || ||||| || || |||||||| || || |||||||    
T  24497344 tatgtaactgcatcacggatcacattttccaagaagatcttcaagacacctctggtttcttcatagatcaatccactgattctcttaacaccacctcttc 24497443  T
Q  249 tt 250  Q
    ||    
T  24497444 tt 24497445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 250
Target Start/End: Original strand, 24923435 - 24923646
Alignment:
Q  39 ttcttcatcatcttcttcaacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgc 138  Q
    |||||| |||| ||||||||||||| || ||||| |  || ||||| ||||||||||| ||||| ||||||||||| || || || ||||||||||| ||    
T  24923435 ttcttcttcatattcttcaacctccaaatccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcactgtcttcctccttgc 24923534  T
Q  139 atgttcagtatacgtaacagcatctcttatcacattctccaagaatatcttcaacacaccgcgagtttcttcgtaaatcaacccgctaattctcttcact 238  Q
     || ||||| || || |||||||| |  || |||||||||||||| |||||||| ||||| |  |||||||| || ||||| || || |||||||| ||     
T  24923535 gtgctcagtgtatgtcacagcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaaca 24923634  T
Q  239 cctcctcttctt 250  Q
    || |||||||||    
T  24923635 ccacctcttctt 24923646  T

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Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 249
Target Start/End: Original strand, 31825533 - 31825742
Alignment:
Q  40 tcttcatcatcttcttcaacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgca 139  Q
    ||||| || ||||| |||||||||||| ||||| |  || ||||| || |||||||| ||||| ||||||||||| || ||||| ||||||||||| ||     
T  31825533 tcttcttcttcttcatcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcg 31825632  T
Q  140 tgttcagtatacgtaacagcatctcttatcacattctccaagaatatcttcaacacaccgcgagtttcttcgtaaatcaacccgctaattctcttcactc 239  Q
    || ||||| || || || ||||| |  || |||||||||||||| |||||||| ||||| | ||||||||| || ||||| || || || |||||||| |    
T  31825633 tgctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctagtttcttcatagatcaaaccactgatcctcttcacac 31825732  T
Q  240 ctcctcttct 249  Q
    | ||||||||    
T  31825733 cacctcttct 31825742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 250
Target Start/End: Original strand, 24919860 - 24920072
Alignment:
Q  38 cttcttcatcatcttcttcaacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcg 137  Q
    |||||||||| ||  | |||||||||||| ||||| |  || ||||| || |||||||| ||||| || |||||||| || || || ||||||||||| |    
T  24919860 cttcttcatcttcagcatcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacgacatccatggctgtcactgtcttcctcctag 24919959  T
Q  138 catgttcagtatacgtaacagcatctcttatcacattctccaagaatatcttcaacacaccgcgagtttcttcgtaaatcaacccgctaattctcttcac 237  Q
    | || ||||| || || |||||||| |  || |||||||| ||||| |||||||| ||||| |  |||||||| || ||||| ||||| |||||||||||    
T  24919960 cgtgctcagtgtatgtcacagcatcacgaatgacattctctaagaagatcttcaagacacctctggtttcttcatagatcaaaccgctgattctcttcac 24920059  T
Q  238 tcctcctcttctt 250  Q
     || |||||||||    
T  24920060 accacctcttctt 24920072  T

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Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 76 - 246
Target Start/End: Complemental strand, 41027742 - 41027572
Alignment:
Q  76 agtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatacgtaacagcatctcttatcacattc 175  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| || || || || || ||||||||||| |  || ||||||    
T  41027742 agtccttccttgtctcttcaatgcataaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagtaacagcatcacgaataacattc 41027643  T
Q  176 tccaagaatatcttcaacacaccgcgagtttcttcgtaaatcaacccgctaattctcttcactcctcctct 246  Q
    ||||| || ||||||||||| || || || |||||||| ||||| ||||| || | |||||||||||||||    
T  41027642 tccaaaaagatcttcaacacgccacgtgtctcttcgtagatcaaaccgcttatacgcttcactcctcctct 41027572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 162
Target Start/End: Complemental strand, 30012182 - 30012097
Alignment:
Q  77 gtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatacgtaacagcatc 162  Q
    ||||||||||| ||||| | ||||||||| |||||||||||||| || ||||| |  |  || |||||||| || |||||||||||    
T  30012182 gtccttccttgcctcttgagcgcataaaccacatccatagcagtcactgtcttgcgacgagcgtgttcagtgtaagtaacagcatc 30012097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 80 - 246
Target Start/End: Complemental strand, 22898719 - 22898553
Alignment:
Q  80 cttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatacgtaacagcatctcttatcacattctcca 179  Q
    ||||| |||||||| |  |||||||| |||||||||||||||||||||||||| || || || ||||| || || ||||||||||| |||||||||||||    
T  22898719 cttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacattctcca 22898620  T
Q  180 agaatatcttcaacacaccgcgagtttcttcgtaaatcaacccgctaattctcttcactcctcctct 246  Q
    | |||||||||||||| || || || || || |||||||| || || || | |||||||||||||||    
T  22898619 aaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgatacgcttcactcctcctct 22898553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 80 - 246
Target Start/End: Complemental strand, 22950387 - 22950221
Alignment:
Q  80 cttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatacgtaacagcatctcttatcacattctcca 179  Q
    ||||| |||||||| |  |||||||| |||||||||||||||||||||||||| || || || ||||| || || ||||||||||| |||||||||||||    
T  22950387 cttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacattctcca 22950288  T
Q  180 agaatatcttcaacacaccgcgagtttcttcgtaaatcaacccgctaattctcttcactcctcctct 246  Q
    | |||||||||||||| || || || || || |||||||| || || || | |||||||||||||||    
T  22950287 aaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgatacgcttcactcctcctct 22950221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 26358561 - 26358694
Alignment:
Q  77 gtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatacgtaacagcatctcttatcacattct 176  Q
    ||||||||||| ||||| | ||||||||||||||||||||||||||| || || |  |  ||||||||||| || || |||||||| |  || |||||||    
T  26358561 gtccttccttgcctcttgagcgcataaacaacatccatagcagtaactgttttgcgacgagcatgttcagtgtaagtgacagcatcacgaataacattct 26358660  T
Q  177 ccaagaatatcttcaacacaccgcgagtttcttc 210  Q
    | |  |||||||| |  ||||| |||||||||||    
T  26358661 caagaaatatcttgagaacaccacgagtttcttc 26358694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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