View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10698_low_34 (Length: 251)

Name: NF10698_low_34
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10698_low_34
NF10698_low_34
[»] chr4 (8 HSPs)
chr4 (1-188)||(16559269-16559456)
chr4 (199-241)||(16559493-16559535)
chr4 (90-174)||(47680395-47680480)
chr4 (90-143)||(47680693-47680746)
chr4 (78-174)||(11307291-11307388)
chr4 (78-115)||(51681598-51681635)
chr4 (91-143)||(47680939-47680991)
chr4 (102-142)||(51681334-51681374)
[»] chr1 (7 HSPs)
chr1 (78-188)||(26231642-26231753)
chr1 (90-171)||(4392197-4392278)
chr1 (78-166)||(43834555-43834644)
chr1 (90-142)||(6182444-6182496)
chr1 (90-142)||(43834276-43834328)
chr1 (30-80)||(15327847-15327897)
chr1 (78-138)||(15327916-15327976)
[»] chr3 (4 HSPs)
chr3 (78-186)||(23161964-23162072)
chr3 (100-173)||(32201121-32201195)
chr3 (78-173)||(43978576-43978673)
chr3 (78-172)||(40196115-40196209)
[»] chr8 (5 HSPs)
chr8 (98-172)||(5981737-5981812)
chr8 (78-143)||(5981475-5981540)
chr8 (37-80)||(5981850-5981893)
chr8 (30-80)||(12156775-12156825)
chr8 (100-188)||(2954495-2954584)
[»] chr6 (2 HSPs)
chr6 (98-188)||(22605243-22605333)
chr6 (125-188)||(7301570-7301634)
[»] chr7 (2 HSPs)
chr7 (123-188)||(27391757-27391822)
chr7 (85-173)||(27938827-27938915)
[»] chr2 (1 HSPs)
chr2 (90-186)||(10066603-10066700)
[»] scaffold0039 (1 HSPs)
scaffold0039 (78-136)||(29083-29141)
[»] chr5 (3 HSPs)
chr5 (123-184)||(5963788-5963849)
chr5 (98-174)||(41340359-41340434)
chr5 (121-173)||(41341558-41341610)


Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 16559269 - 16559456
Alignment:
Q  1 acttctccaaatttgttagggtgcaagcagttgggaaatcaagtgtgagcgattatgtcacacattaattaggaatggagaggggactgatatacctatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||| |||||| |||||    
T  16559269 acttctccaaatttgttagggtgcaagcagttgggaaatcaagtgtgagcgattatgttacacatcgattaggaatggagaggggaccgatatatctatt 16559368  T
Q  101 gccttaagattttggttggaaatgtggtgtctaagtctcttatggtcctaaacgttcagcccattgccgctccccggactccccaaca 188  Q
      ||||||||||||| |||| ||||||||||||||||||||||  |||||||||||  | ||||||||||||||||||||||||||||    
T  16559369 atcttaagattttggatggagatgtggtgtctaagtctcttataatcctaaacgtttggtccattgccgctccccggactccccaaca 16559456  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 241
Target Start/End: Original strand, 16559493 - 16559535
Alignment:
Q  199 gcatccatacaccggggtgtctaagtacgaaggattacctatg 241  Q
    |||||||||||||| ||||||||||||| ||||||||||||||    
T  16559493 gcatccatacaccgtggtgtctaagtacaaaggattacctatg 16559535  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 174
Target Start/End: Original strand, 47680395 - 47680480
Alignment:
Q  90 atatacctattgccttaagattttggttggaaatgtggtgtctaagtctctta-tggtcctaaacgttcagcccattgccgctccc 174  Q
    ||||||||  ||||||||| |||| | |||||||||||| ||||| ||||||| ||||||| |||||| | | |||||||||||||    
T  47680395 atatacctgatgccttaaggtttttggtggaaatgtggtttctaaatctcttattggtcctgaacgtttaactcattgccgctccc 47680480  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 143
Target Start/End: Original strand, 47680693 - 47680746
Alignment:
Q  90 atatacctattgccttaagattttggttggaaatgtggtgtctaagtctcttat 143  Q
    ||||||||  ||||||||| |||||| |||| ||||||||||||||||||||||    
T  47680693 atatacctgatgccttaaggttttgggtggagatgtggtgtctaagtctcttat 47680746  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 174
Target Start/End: Complemental strand, 11307388 - 11307291
Alignment:
Q  78 gagaggggactgatatacctattgccttaagattttggttggaaatgtggtgtctaagtctctta-tggtcctaaacgttcagcccattgccgctccc 174  Q
    ||||||||||   |||||||  ||||||||  |||||| |||| ||||||||||||||||||||| ||||||| ||| || |||  |||| |||||||    
T  11307388 gagaggggacacgtatacctgatgccttaatgttttgggtggagatgtggtgtctaagtctcttagtggtcctgaacatttagcttattgtcgctccc 11307291  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 51681598 - 51681635
Alignment:
Q  78 gagaggggactgatatacctattgccttaagattttgg 115  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  51681598 gagaggggactcatatacccattgccttaagattttgg 51681635  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 47680939 - 47680991
Alignment:
Q  91 tatacctattgccttaagattttggttggaaatgtggtgtctaagtctcttat 143  Q
    |||||||  ||||||||| |||| | |||||||||||| ||||||||||||||    
T  47680939 tatacctgatgccttaaggtttttggtggaaatgtggtttctaagtctcttat 47680991  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 51681334 - 51681374
Alignment:
Q  102 ccttaagattttggttggaaatgtggtgtctaagtctctta 142  Q
    ||||||| |||||| |||| |||||||||||||||||||||    
T  51681334 ccttaaggttttgggtggagatgtggtgtctaagtctctta 51681374  T

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Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 78 - 188
Target Start/End: Complemental strand, 26231753 - 26231642
Alignment:
Q  78 gagaggggactgatatacctattgccttaagattttggttggaaatgtggtgtctaagtctctta-tggtcctaaacgttcagcccattgccgctccccg 176  Q
    ||||||||||  ||||||| ||| ||||||| |||||| |||| |||||||||| |||||||||| ||||||  |||||| ||||||||||||||  |||    
T  26231753 gagaggggacccatataccaattaccttaaggttttgggtggagatgtggtgtccaagtctcttagtggtccataacgtttagcccattgccgctttccg 26231654  T
Q  177 gactccccaaca 188  Q
    ||||||||||||    
T  26231653 gactccccaaca 26231642  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 4392278 - 4392197
Alignment:
Q  90 atatacctattgccttaagattttggttggaaatgtggtgtctaagtctcttatggtcctaaacgttcagcccattgccgct 171  Q
    ||||||||  |||||||||||||||| |||| ||||||||| |||||  |||||||||||  |||||   ||||||||||||    
T  4392278 atatacctgatgccttaagattttggatggagatgtggtgtataagtgacttatggtccttgacgtttgacccattgccgct 4392197  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 43834555 - 43834644
Alignment:
Q  78 gagaggggactgatatacctattgccttaagattttggttggaaatgtggtgtctaagtctctt-atggtcctaaacgttcagcccattg 166  Q
    ||||||||||  ||||||||| || |||||| |||| | |||| |||||| ||||||||||||| ||||||||| ||||| || ||||||    
T  43834555 gagaggggacccatatacctaatgtcttaaggtttttgatggagatgtggcgtctaagtctcttgatggtcctagacgtttagtccattg 43834644  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 6182444 - 6182496
Alignment:
Q  90 atatacctattgccttaagattttggttggaaatgtggtgtctaagtctctta 142  Q
    ||||||||  |||||||||||||||| |||| ||||||||| |||||||||||    
T  6182444 atatacctgatgccttaagattttgggtggagatgtggtgtataagtctctta 6182496  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 43834276 - 43834328
Alignment:
Q  90 atatacctattgccttaagattttggttggaaatgtggtgtctaagtctctta 142  Q
    ||||||||| ||| |||||||||||| |||| |||||| ||||||||||||||    
T  43834276 atatacctaatgctttaagattttggatggagatgtggcgtctaagtctctta 43834328  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 15327847 - 15327897
Alignment:
Q  30 gttgggaaatcaagtgtgagcgattatgtcacacattaattaggaatggag 80  Q
    |||||||||||||||||||| ||||||||| |||||  | |||||||||||    
T  15327847 gttgggaaatcaagtgtgagtgattatgtctcacatcgactaggaatggag 15327897  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 138
Target Start/End: Original strand, 15327916 - 15327976
Alignment:
Q  78 gagaggggactgatatacctattgccttaagattttggttggaaatgtggtgtctaagtct 138  Q
    ||||||||||  |||||||| ||| ||| || |||||| |||| |||||||||||||||||    
T  15327916 gagaggggacccatatacctgttgtcttgaggttttgggtggagatgtggtgtctaagtct 15327976  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 23161964 - 23162072
Alignment:
Q  78 gagaggggactgatatacctattgccttaagattttggttggaaatgtggtgtctaagtctcttatggtcctaaacgttcagcccattgccgctccccgg 177  Q
    |||||| |||| |||||||   |||||||||||||||| |||| ||||||||| ||| | ||||||||||||  |||||  |||||||| ||||||||||    
T  23161964 gagaggtgactcatatacccgatgccttaagattttgggtggagatgtggtgtttaattttcttatggtcctggacgtttggcccattgtcgctccccgg 23162063  T
Q  178 actccccaa 186  Q
    |||||||||    
T  23162064 actccccaa 23162072  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 32201121 - 32201195
Alignment:
Q  100 tgccttaagattttggttggaaatgtggtgtctaagtctctta-tggtcctaaacgttcagcccattgccgctcc 173  Q
    |||||||||||||||| |||| ||||||||||||||| ||||| ||||||| |||||| |||||||||| |||||    
T  32201121 tgccttaagattttgggtggagatgtggtgtctaagtttcttagtggtcctgaacgtttagcccattgctgctcc 32201195  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 173
Target Start/End: Complemental strand, 43978673 - 43978576
Alignment:
Q  78 gagaggggactgatatacctattgccttaagattttggttggaaatgtggtgtctaagtctctta--tggtcctaaacgttcagcccattgccgctcc 173  Q
    |||||| |||| ||||||||||||||||||| |||||| |||| ||||| | |||||||||||||   ||||||| ||||| | ||||||||||||||    
T  43978673 gagaggagactcatatacctattgccttaaggttttgggtggagatgtgatatctaagtctcttaacgggtcctagacgtttaacccattgccgctcc 43978576  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 172
Target Start/End: Complemental strand, 40196209 - 40196115
Alignment:
Q  78 gagaggggactgatatacctattgccttaagattttggttggaaatgtggtgtctaagtctcttatggtcctaaacgttcagcccattgccgctc 172  Q
    ||||||||||  ||||||||   |||||||| |||||| |||| || ||| ||||||||||||||||||| || | |||  ||||||||||||||    
T  40196209 gagaggggacccatatacctgacgccttaaggttttgggtggagatatggagtctaagtctcttatggtcttagatgtttggcccattgccgctc 40196115  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 5981812 - 5981737
Alignment:
Q  98 attgccttaagattttggttggaaatgtggtgtctaagtctctta-tggtcctaaacgttcagcccattgccgctc 172  Q
    ||||||||||| |||||| |||| ||||||||||||||||||||| |||||||  | ||| |||||||||||||||    
T  5981812 attgccttaaggttttgggtggagatgtggtgtctaagtctcttactggtccttgaagtttagcccattgccgctc 5981737  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 5981540 - 5981475
Alignment:
Q  78 gagaggggactgatatacctattgccttaagattttggttggaaatgtggtgtctaagtctcttat 143  Q
    ||||||||||  || |||||  ||||||||| |||||| |||||||||||||||||||||||||||    
T  5981540 gagaggggacccatgtacctgatgccttaaggttttgggtggaaatgtggtgtctaagtctcttat 5981475  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 5981893 - 5981850
Alignment:
Q  37 aatcaagtgtgagcgattatgtcacacattaattaggaatggag 80  Q
    ||||||||||||| ||||||||| ||||| ||||||||||||||    
T  5981893 aatcaagtgtgagggattatgtcccacatcaattaggaatggag 5981850  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 12156825 - 12156775
Alignment:
Q  30 gttgggaaatcaagtgtgagcgattatgtcacacattaattaggaatggag 80  Q
    |||||| ||||||||||||| ||||||||| |||||  |||||||||||||    
T  12156825 gttgggtaatcaagtgtgagtgattatgtcccacatcgattaggaatggag 12156775  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 188
Target Start/End: Complemental strand, 2954584 - 2954495
Alignment:
Q  100 tgccttaagattttggttggaaatgtggtgtctaagtctctta-tggtcctaaacgttcagcccattgccgctccccggactccccaaca 188  Q
    ||||||||| |||| | |||| |||||| |||||||||||||| |||||||  |||||   ||||||||||||||| || || |||||||    
T  2954584 tgccttaaggttttcggtggagatgtggcgtctaagtctcttattggtcctggacgtttgacccattgccgctcccggggcttcccaaca 2954495  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 188
Target Start/End: Complemental strand, 22605333 - 22605243
Alignment:
Q  98 attgccttaagattttggttggaaatgtggtgtctaagtctcttatggtcctaaacgttcagcccattgccgctccccggactccccaaca 188  Q
    ||||||||||| |||||| |   |||||||||| |||||||||||||||| |  |||||  |||||||||||||||| || ||||||||||    
T  22605333 attgccttaaggttttgggtaagaatgtggtgtttaagtctcttatggtcttggacgtttggcccattgccgctcccggggctccccaaca 22605243  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 188
Target Start/End: Complemental strand, 7301634 - 7301570
Alignment:
Q  125 tggtgtctaagtctctta-tggtcctaaacgttcagcccattgccgctccccggactccccaaca 188  Q
    |||||||||||||||||| |||||||| | ||| ||||||||| ||||||||  |||||||||||    
T  7301634 tggtgtctaagtctcttagtggtcctagaggtttagcccattgtcgctccccaaactccccaaca 7301570  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 188
Target Start/End: Complemental strand, 27391822 - 27391757
Alignment:
Q  123 tgtggtgtctaagtctcttatggtcctaaacgttcagcccattgccgctccccggactccccaaca 188  Q
    |||||||| |||||||||||| ||| | ||||||  || ||||||||||||||| |||||||||||    
T  27391822 tgtggtgtttaagtctcttatagtcttgaacgtttggctcattgccgctccccgaactccccaaca 27391757  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 27938827 - 27938915
Alignment:
Q  85 gactgatatacctattgccttaagattttggttggaaatgtggtgtctaagtctctta-tggtcctaaacgttcagcccattgccgctcc 173  Q
    |||| |||||||||  |||||||| |||||| || | |||||||||| |||||||||| |||||||| || |||||| ||||||||||||    
T  27938827 gactcatatacctaaagccttaaggttttggatgtagatgtggtgtc-aagtctcttagtggtcctagacattcagctcattgccgctcc 27938915  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 186
Target Start/End: Original strand, 10066603 - 10066700
Alignment:
Q  90 atatacctattgccttaagattttggttggaaatgtggtgtctaagtctctta-tggtcctaaacgttcagcccattgccgctccccggactccccaa 186  Q
    ||||||||| |||||||||||||||| |||| ||||||| | ||| ||||||| |||||||  || || ||  ||||| ||||||| |||||||||||    
T  10066603 atatacctaatgccttaagattttgggtggagatgtggtatataaatctcttagtggtcctggacatttagaacattgtcgctccctggactccccaa 10066700  T

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Target: scaffold0039 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 29083 - 29141
Alignment:
Q  78 gagaggggactgatatacctattgccttaagattttggttggaaatgtggtgtctaagt 136  Q
    ||||||||||| ||||| ||  || ||||||||||||| |||| |||||||||||||||    
T  29083 gagaggggactcatatatctgatgtcttaagattttgggtggagatgtggtgtctaagt 29141  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 5963788 - 5963849
Alignment:
Q  123 tgtggtgtctaagtctcttatggtcctaaacgttcagcccattgccgctccccggactcccc 184  Q
    |||||||| ||||||||||||||||||  |||||   ||||||||||||||| || ||||||    
T  5963788 tgtggtgtttaagtctcttatggtcctggacgtttgacccattgccgctcccggggctcccc 5963849  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 41340359 - 41340434
Alignment:
Q  98 attgccttaagattttggttggaaatgtggtgtctaagtctcttatggtcctaaacgttcagcccattgccgctccc 174  Q
    |||||||||||||||||| |   | |||||||| |||||||||||||||| |  |||||  ||||||||||||||||    
T  41340359 attgccttaagattttggataagagtgtggtgtttaagtctcttatggtcttggacgtt-tgcccattgccgctccc 41340434  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 41341558 - 41341610
Alignment:
Q  121 aatgtggtgtctaagtctcttatggtcctaaacgttcagcccattgccgctcc 173  Q
    |||||||||| |||||||||||| |||||  |||||  |||||||||||||||    
T  41341558 aatgtggtgtttaagtctcttatagtcctggacgtttggcccattgccgctcc 41341610  T

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