View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10698_low_43 (Length: 247)
Name: NF10698_low_43
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10698_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 43225047 - 43225284
Alignment:
| Q |
1 |
ttaatcttattatgttttataacataatgagtgacttatagctaaagattcgccacacaaagatcactgcatttaaagattctaacacaaagggctaagg |
100 |
Q |
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| T |
43225047 |
ttaatcttattatgttttataacat---gagtgacttatagctaaagattcaccacacaaagatcactgcatttaaagattctaacacaaagggctaagg |
43225143 |
T |
|
| Q |
101 |
aattataatttattactataatttaaatgacaattcatctacaacagatgtgtcccaacccacaacctcgtggcatcaattatatggctgtttctaaata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43225144 |
aattataatttattactataatttaaatgacaattcatctacaacagatgtgt-ccaacccacaacctcgtggcatcaattatatggctgtttctaaata |
43225242 |
T |
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| Q |
201 |
atatttgcttataattcatcatgaattttcccctttgctact |
242 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43225243 |
atatttgcttataattcatcatgaattttcccctttactact |
43225284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 41652879 - 41652656
Alignment:
| Q |
1 |
ttaatcttattatgttttataacataatgagtgacttatagctaaagattcgccacacaaagatcactgcatttaaaga-ttctaacacaaagggctaag |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||| ||||||||| |||||| |
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| T |
41652879 |
ttaatcttattatgttttataacataatgagtgacttatagttaaagattcgccacacaaagatcaccacatttaaagatttcaaacacaaagagctaag |
41652780 |
T |
|
| Q |
100 |
gaattataatttattactataatttaaatgacaattcatctacaacagatgtgtcccaaccca------caacctcgtggcatcaattatatggctgttt |
193 |
Q |
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|||| |||||||||||||| ||||||||||||||||||| || |||||||| |||||||||||||||||||||||| || ||| |
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| T |
41652779 |
gaat-------------tataatttaaatgataattcatctacaacagatgggt-ccaacccaatgtcccaacctcgtggcatcaattatatgccttttt |
41652694 |
T |
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| Q |
194 |
ctaaataatatttgcttataattcatcatgaattttcc |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
41652693 |
ctaaataatatttgcttataattcatcatgaattttcc |
41652656 |
T |
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