View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10698_low_46 (Length: 243)
Name: NF10698_low_46
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10698_low_46 |
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| [»] chr2 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0368 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 7390173 - 7390400
Alignment:
| Q |
19 |
gtcacgatctcttatctcttttttccatctaccaaactctgatagctctctgtctctacattatgaacacagttttccgccgaaaaatatatttgtcgca |
118 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||||||||| || |||||||||||||| || |||||||||||| ||||||||||| |
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| T |
7390173 |
gtcacgatctccgatctctttcttccatctaccaaactctgatagctctctctc----cattatgaacacagattgccgccgaaaaatttatttgtcgca |
7390268 |
T |
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| Q |
119 |
ctgatccgcgcacatctcgccgactccgcaattgtcaccgcaacaacaaatgaccttcataattgtcaccggtaactcactttctcccac-------tga |
211 |
Q |
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||||||| ||||||||||||||||||||||| || | ||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
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| T |
7390269 |
ctgatccacgcacatctcgccgactccgcaaatgccgccgcaacaacaaatgaccttcgtaattgtcaccggtaactcactttctcccaccgattcatgt |
7390368 |
T |
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| Q |
212 |
ttcatgttcatattgattgtgtgaattttgct |
243 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
7390369 |
ttcatgttcatattgattgtgtgaattttgct |
7390400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 19586939 - 19586712
Alignment:
| Q |
19 |
gtcacgatctcttatctcttttttccatctaccaaactctgatagctctctgtctctacattatgaacacagttttccgccgaaaaatatatttgtcgca |
118 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||||||||| || |||||||||||||| || |||||||||||| ||||||||||| |
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| T |
19586939 |
gtcacgatctccgatctctttattccatctaccaaactctgatagctctctctc----cattatgaacacagattgccgccgaaaaatttatttgtcgca |
19586844 |
T |
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| Q |
119 |
ctgatccgcgcacatctcgccgactccgcaattgtcaccgcaacaacaaatgaccttcataattgtcaccggtaactcactttctcccac-------tga |
211 |
Q |
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| T |
19586843 |
ctgatccacgcacatctcgccgactccgcaaatgccgccgcaacaacaaatgaccttcgtaattgtcaccggtaactcactttctcccaccgattcatgt |
19586744 |
T |
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| Q |
212 |
ttcatgttcatattgattgtgtgaattttgct |
243 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
19586743 |
ttcatgttcatattgattgtgtgaattttgct |
19586712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 11658793 - 11658566
Alignment:
| Q |
19 |
gtcacgatctcttatctcttttttccatctaccaaactctgatagctctctgtctctacattatgaacacagttttccgccgaaaaatatatttgtcgca |
118 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||||||||| || |||||||||||||| | |||||||||||| ||||||||||| |
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| T |
11658793 |
gtcacgatctccgatctctttcttccatctaccaaactctgatagctctctctc----cattatgaacacagatagccgccgaaaaatttatttgtcgca |
11658698 |
T |
|
| Q |
119 |
ctgatccgcgcacatctcgccgactccgcaattgtcaccgcaacaacaaatgaccttcataattgtcaccggtaactcactttctcccac-------tga |
211 |
Q |
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||||||| ||||||||||||||||||||||| || | ||||||||||||||||||||| |||||||||||||||||||||||||||| || || |
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| T |
11658697 |
ctgatccacgcacatctcgccgactccgcaaatgccgccgcaacaacaaatgaccttcgtaattgtcaccggtaactcactttctcctaccgattcatgt |
11658598 |
T |
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| Q |
212 |
ttcatgttcatattgattgtgtgaattttgct |
243 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
11658597 |
ttcatgttcatattgattgtgtgaattttgct |
11658566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 51655309 - 51655538
Alignment:
| Q |
18 |
agtcacgatctcttatctcttttttccatctaccaaactctgatagctctctgtctctacattatgaacacagttttccg-ccgaaaaatatatttgtcg |
116 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||||| || |||||||||||| | || | | ||||||||| |||||||| |
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| T |
51655309 |
agtcacgatctccgatctctttcctccatctaccaaactctgatagctctctctc----cattatgaacaccgattgctggccgaaaaatttatttgtca |
51655404 |
T |
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| Q |
117 |
cactgatccgcgcacatctcgccgactccgcaattgtcaccgcaacaacaaatgaccttcataattgtcaccggtaactcactttctcccac-------t |
209 |
Q |
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||||||||| ||||||||||||||||||||||||| | ||| ||||||||||||||||| ||||||||||||||||||||||||||||||| | |
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| T |
51655405 |
cactgatccacgcacatctcgccgactccgcaatttccgccggaacaacaaatgaccttcgtaattgtcaccggtaactcactttctcccaccgattcat |
51655504 |
T |
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| Q |
210 |
gattcatgttcatattgattgtgtgaattttgct |
243 |
Q |
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| ||||||||||||||||| |||||||||||||| |
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| T |
51655505 |
gtttcatgttcatattgatagtgtgaattttgct |
51655538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0368 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0368
Description:
Target: scaffold0368; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 13359 - 13480
Alignment:
| Q |
119 |
ctgatccgcgcacatctcgccgactccgcaattgtcaccgcaacaacaaatgaccttcataattgtcaccggtaactcactttctcccactgattcatgt |
218 |
Q |
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||||||| ||||||||||||||||||||||| || | || |||||||||||||||||| ||| |||| |||||||||||||||||||||| ||||||||| |
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| T |
13359 |
ctgatccacgcacatctcgccgactccgcaactgccgccacaacaacaaatgaccttcgtaagtgtcgccggtaactcactttctcccaccgattcatgt |
13458 |
T |
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| Q |
219 |
tcatattgattgtgtgaatttt |
240 |
Q |
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|||||||||||||||||||||| |
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| T |
13459 |
tcatattgattgtgtgaatttt |
13480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 42837448 - 42837327
Alignment:
| Q |
119 |
ctgatccgcgcacatctcgccgactccgcaattgtcaccgcaacaacaaatgaccttcataattgtcaccggtaactcactttctcccactgattcatgt |
218 |
Q |
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||||||| ||||||||||||||||||||||| || | || |||||||||||||||||| ||| |||| |||||||||||||||||||||| ||||||||| |
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| T |
42837448 |
ctgatccacgcacatctcgccgactccgcaactgccgccacaacaacaaatgaccttcgtaagtgtcgccggtaactcactttctcccaccgattcatgt |
42837349 |
T |
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| Q |
219 |
tcatattgattgtgtgaatttt |
240 |
Q |
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|||||||||||||||||||||| |
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| T |
42837348 |
tcatattgattgtgtgaatttt |
42837327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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