View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10698_low_50 (Length: 241)
Name: NF10698_low_50
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10698_low_50 |
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| [»] scaffold0039 (1 HSPs) |
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| [»] scaffold0043 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 225
Target Start/End: Original strand, 34293101 - 34293315
Alignment:
| Q |
11 |
agatggacatcaataatgcctttttacaaggaaaattaactgaaaatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgt |
110 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34293101 |
agatggatgtcaataatgcctttttacaaggaaaattaactgaagatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgt |
34293200 |
T |
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| Q |
111 |
ttgcaaacttaagaaagctatatatggtttgagacaaacacctcgcgcgtggcatgattctttcaaggcattcgttctctctgttgggttttgtacaagc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
34293201 |
ttgcaaacttaagaaagctatatatggtttgagacaagcacctcgcgcgtggcatgattctctcaaggcattcgttctctttgttgggttttgtacaagc |
34293300 |
T |
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| Q |
211 |
ctaagtgatccatct |
225 |
Q |
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||||||||||||||| |
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| T |
34293301 |
ctaagtgatccatct |
34293315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 225
Target Start/End: Complemental strand, 24486783 - 24486569
Alignment:
| Q |
11 |
agatggacatcaataatgcctttttacaaggaaaattaactgaaaatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgt |
110 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24486783 |
agatggatgtcaataatgcctttttacaaggaaaattaactgaagatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgt |
24486684 |
T |
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| Q |
111 |
ttgcaaacttaagaaagctatatatggtttgagacaaacacctcgcgcgtggcatgattctttcaaggcattcgttctctctgttgggttttgtacaagc |
210 |
Q |
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| T |
24486683 |
ttgcaagcttaagaaagctatatatggtttgagacaagcacctcgcgcgtggcatgattctctcaaggcattcgttctctctgttgggttttgtacaagc |
24486584 |
T |
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| Q |
211 |
ctaagtgatccatct |
225 |
Q |
| |
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||||||||||||||| |
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| T |
24486583 |
ctaagtgatccatct |
24486569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 225
Target Start/End: Complemental strand, 24495117 - 24494903
Alignment:
| Q |
11 |
agatggacatcaataatgcctttttacaaggaaaattaactgaaaatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgt |
110 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24495117 |
agatggatgtcaataatgcctttttacaaggaaaattaactgaagatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgt |
24495018 |
T |
|
| Q |
111 |
ttgcaaacttaagaaagctatatatggtttgagacaaacacctcgcgcgtggcatgattctttcaaggcattcgttctctctgttgggttttgtacaagc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
24495017 |
ttgcaaacttaagaaagctatatatggtttgagacaagcacctcgcgcgtggcatgattctctcaaggcattcgttctctatgttgggttttgtacaagc |
24494918 |
T |
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| Q |
211 |
ctaagtgatccatct |
225 |
Q |
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||||||||||||||| |
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| T |
24494917 |
ctaagtgatccatct |
24494903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 170
Target Start/End: Complemental strand, 59182 - 59037
Alignment:
| Q |
25 |
aatgcctttttacaaggaaaattaactgaaaatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgtttgcaaacttaaga |
124 |
Q |
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|||||||| || |||||||||||| ||||| |||| || |||||||| || ||||| || || || |||||| |||| || ||| |||| || || |||| |
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| T |
59182 |
aatgccttcttgcaaggaaaattatctgaagatgtgtatatgcagcagcccccaggttttatccattctgaatttcctcatcatatttgtaagctcaaga |
59083 |
T |
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| Q |
125 |
aagctatatatggtttgagacaaacacctcgcgcgtggcatgattc |
170 |
Q |
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|||| || ||||||||| | || ||||||| || ||||||||||| |
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| T |
59082 |
aagcaatttatggtttgtggcaggcacctcgtgcatggcatgattc |
59037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 168
Target Start/End: Complemental strand, 81949 - 81833
Alignment:
| Q |
52 |
gaaaatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgtttgcaaacttaagaaagctatatatggtttgagacaaacac |
151 |
Q |
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|||||||| | |||| | ||||| || || |||||||| |||||| |||| | |||||||||||||| ||||| ||||||||||| || || || || | |
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| T |
81949 |
gaaaatgttttcatggaacaaccacctggtttcattcattctgaatttcctaatcatgtttgcaaactcaagaaggctatatatggattaaggcagactc |
81850 |
T |
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| Q |
152 |
ctcgcgcgtggcatgat |
168 |
Q |
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|||| || ||||||||| |
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| T |
81849 |
ctcgagcatggcatgat |
81833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 137
Target Start/End: Complemental strand, 32323741 - 32323656
Alignment:
| Q |
52 |
gaaaatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgtttgcaaacttaagaaagctatatatgg |
137 |
Q |
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|||||||| | |||| | ||||| || || |||||||| |||||| |||| | |||||||||||||| ||||| ||||||||||| |
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| T |
32323741 |
gaaaatgttttcatggaacaaccacctggtttcattcattctgaatttcctaatcatgtttgcaaactcaagaaggctatatatgg |
32323656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 137
Target Start/End: Complemental strand, 18728777 - 18728692
Alignment:
| Q |
52 |
gaaaatgtctacatgcagcaaccgccagggttcattcactctgaacttccacaacatgtttgcaaacttaagaaagctatatatgg |
137 |
Q |
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|||||||| | |||| | ||||| || || |||||||| |||||| |||| | |||||||||||||| ||||| ||||||||||| |
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| T |
18728777 |
gaaaatgttttcatggaacaaccacctggtttcattcattctgaatttcctaatcatgtttgcaaactcaagaaggctatatatgg |
18728692 |
T |
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