View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10698_low_57 (Length: 231)

Name: NF10698_low_57
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10698_low_57
NF10698_low_57
[»] chr5 (1 HSPs)
chr5 (1-221)||(26358386-26358603)
[»] chr2 (3 HSPs)
chr2 (1-111)||(30012140-30012255)
chr2 (78-182)||(30012265-30012366)
chr2 (1-66)||(41027699-41027764)
[»] chr4 (3 HSPs)
chr4 (1-66)||(22898680-22898745)
chr4 (1-66)||(22950348-22950413)
chr4 (1-66)||(53328841-53328906)
[»] chr7 (1 HSPs)
chr7 (1-55)||(10575514-10575568)
[»] chr3 (1 HSPs)
chr3 (1-52)||(21584601-21584652)
[»] chr8 (1 HSPs)
chr8 (1-43)||(14261045-14261087)


Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 26358603 - 26358386
Alignment:
Q  1 ctgctatggatgttgtttatgcgctcaagaggcaaggaaggaccctttatggttttgggggttaggttagggtattgttaattagtagtaagaaaagtga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26358603 ctgctatggatgttgtttatgcgctcaagaggcaaggaaggaccctttatggttttgggggttaggttagggtattgttaattagtagtaagaaaagtga 26358504  T
Q  101 attagtagtaattagtcgtaatagcttgttgaatcttttagtactgtatcacttttctaactcttgccaatatataattgttcctttcgtctttgttaat 200  Q
    |||||||   ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26358503 attagta---attagtcgttatagcttgttgaatcttttagtactgtatcacttttctaactcttgccaatatataattgttcctttcgtctttgttaat 26358407  T
Q  201 ttattgaattttaaatctctg 221  Q
    |||||||||||||||||||||    
T  26358406 ttattgaattttaaatctctg 26358386  T

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Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 30012140 - 30012255
Alignment:
Q  1 ctgctatggatgttgtttatgcgctcaagaggcaaggaaggaccctttatggttttgggggttaggttagggtat-----tgttaattagtagtaagaaa 95  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     ||||||||||||||||||||    
T  30012140 ctgctatggatgtggtttatgcgctcaagaggcaaggaaggaccctttatggttttgggtgttaggttagggtattgtcatgttaattagtagtaagaaa 30012239  T
Q  96 agtgaattagtagtaa 111  Q
    ||||||||||||||||    
T  30012240 agtgaattagtagtaa 30012255  T

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Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 78 - 182
Target Start/End: Original strand, 30012265 - 30012366
Alignment:
Q  78 ttaattagtagtaagaaaagtgaattagtagtaattagtcgtaatagcttgttgaatcttttagtactgtatcacttttctaactcttgccaatatataa 177  Q
    |||||||||||||||||||||||||||||   |||||||||||||| |||  |||||||||||||| |||||||||||||||||||||| ||||||||||    
T  30012265 ttaattagtagtaagaaaagtgaattagt---aattagtcgtaataacttcatgaatcttttagtattgtatcacttttctaactcttggcaatatataa 30012361  T
Q  178 ttgtt 182  Q
    |||||    
T  30012362 ttgtt 30012366  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 41027699 - 41027764
Alignment:
Q  1 ctgctatggatgttgtttatgcgctcaagaggcaaggaaggaccctttatggttttgggggttagg 66  Q
    ||||||||||||||||||||||  | ||||| ||||||||||| |||||||| |||||||||||||    
T  41027699 ctgctatggatgttgtttatgcattgaagagacaaggaaggactctttatggatttgggggttagg 41027764  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 22898680 - 22898745
Alignment:
Q  1 ctgctatggatgttgtttatgcgctcaagaggcaaggaaggaccctttatggttttgggggttagg 66  Q
    ||||||||||||| |||||||| |||||||| || ||||| |||||||| || |||||||||||||    
T  22898680 ctgctatggatgtggtttatgccctcaagagacagggaagaaccctttacggatttgggggttagg 22898745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 22950348 - 22950413
Alignment:
Q  1 ctgctatggatgttgtttatgcgctcaagaggcaaggaaggaccctttatggttttgggggttagg 66  Q
    ||||||||||||| |||||||| |||||||| || ||||| |||||||| || |||||||||||||    
T  22950348 ctgctatggatgtggtttatgccctcaagagacagggaagaaccctttacggatttgggggttagg 22950413  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 53328841 - 53328906
Alignment:
Q  1 ctgctatggatgttgtttatgcgctcaagaggcaaggaaggaccctttatggttttgggggttagg 66  Q
    |||| |||||||||||||| || ||||||||||| |||||||| ||||| ||||| ||||||||||    
T  53328841 ctgcaatggatgttgtttacgctctcaagaggcagggaaggactctttacggtttcgggggttagg 53328906  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 10575514 - 10575568
Alignment:
Q  1 ctgctatggatgttgtttatgcgctcaagaggcaaggaaggaccctttatggttt 55  Q
    ||||||||||||||||||| ||||| ||||| |||||||| ||||| ||||||||    
T  10575514 ctgctatggatgttgtttacgcgcttaagagacaaggaagaaccctctatggttt 10575568  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 21584652 - 21584601
Alignment:
Q  1 ctgctatggatgttgtttatgcgctcaagaggcaaggaaggaccctttatgg 52  Q
    ||||||||||||||||||||||  | |||||||||||||| || ||||||||    
T  21584652 ctgctatggatgttgtttatgctttgaagaggcaaggaagaacgctttatgg 21584601  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 14261087 - 14261045
Alignment:
Q  1 ctgctatggatgttgtttatgcgctcaagaggcaaggaaggac 43  Q
    ||||||||||||||||||||||| | ||||| |||||||||||    
T  14261087 ctgctatggatgttgtttatgcgttgaagagacaaggaaggac 14261045  T

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