View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10698_low_58 (Length: 230)
Name: NF10698_low_58
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10698_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 45074294 - 45074494
Alignment:
| Q |
18 |
gtatacttaccaaaccatgaatccaaccacgaatttgttagctgtggaacatagttttgttaactagcattgtcagaatagttggataaggttaaatctc |
117 |
Q |
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| T |
45074294 |
gtatacttaccaaaccatgaatccaaccacgaatttgttagctgtggaacatagttttgttaactagcattgtcagaatagttggataaggttaaatctc |
45074393 |
T |
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| Q |
118 |
gcagcgaaatctgggcagccatgacacatccgttgcaggcctatgcaagaagctttggtttagtctagtacatactatcatgcaagaaaataacctttgc |
217 |
Q |
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| T |
45074394 |
gcagcgaaatctgggcagccatgacacatccgttgcaggcctatgcaagaagctttggtttagtctagtacatactatcatgcaagaaaataacctttgc |
45074493 |
T |
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| Q |
218 |
t |
218 |
Q |
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| T |
45074494 |
t |
45074494 |
T |
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Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 8881170 - 8881227
Alignment:
| Q |
30 |
aaccatgaatccaaccacgaatttgttagctgtggaacatagttttgttaactagcat |
87 |
Q |
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| T |
8881170 |
aaccataaatccaaccacgaatttggtagctgtggaacatagttttgttaactagcat |
8881227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 176
Target Start/End: Original strand, 37485237 - 37485313
Alignment:
| Q |
100 |
tggataaggttaaatctcgcagcgaaatctgggcagccatgacacatccgttgcaggcctatgcaagaagctttggt |
176 |
Q |
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| T |
37485237 |
tggatatggttaaatctcacagcgaaatctaggcagccatgacacaatcattgcacgcctatgcaaaaagttttggt |
37485313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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