View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10698_low_60 (Length: 227)
Name: NF10698_low_60
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10698_low_60 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 10 - 214
Target Start/End: Complemental strand, 13576698 - 13576490
Alignment:
| Q |
10 |
aaatcagctttaaaattaacatagaatttataaaagaacccaataacattcaagattcatcatcataaaacagccattagattcaatttcttaaca---- |
105 |
Q |
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| T |
13576698 |
aaatcagctttaaaattaacatagcatttataaaagaacccaataacattcaagattcatcatcataaaaaagccattagattaaatttcttaacaaaca |
13576599 |
T |
|
| Q |
106 |
catagaaaatcagactaaagtcacaaaagatacatcaaacctaaggacataaccctaattatagatccaactaatctcatctagaccctaaatctaagcc |
205 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
13576598 |
cattgaaaatcagactaaagtcacaaaagatacatcaaacctaagaacacaaccctaattatagatcctgctaatctcatctaaaccctaaatctaagcc |
13576499 |
T |
|
| Q |
206 |
ctttcgcct |
214 |
Q |
| |
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||||||||| |
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| T |
13576498 |
ctttcgcct |
13576490 |
T |
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