View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10698_low_61 (Length: 227)
Name: NF10698_low_61
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10698_low_61 |
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| [»] scaffold0095 (1 HSPs) |
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Alignment Details
Target: scaffold0095 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 34971 - 35161
Alignment:
| Q |
17 |
agattggacattttaaattttaaatcgtgtattactgtacaaatgcaaggatcgatatccattgtttgaaaactaaaatataggataaaatgatcctaaa |
116 |
Q |
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| T |
34971 |
agattggacattttaaattttaaatcgtgtattactgtacaaatgcaaggat----atccattgtttgaaaactaaaatataggataaaatgatcctaaa |
35066 |
T |
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| Q |
117 |
tgtatattaccttacataaacttaactgaactcaagtgcaattaatgtttaagtaggagatagaggaaatagtgataaacaaatgtaaactaatt |
211 |
Q |
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| T |
35067 |
tgtatattaccttacataaacttaactgaactcaagtgcaattaatgtttaagtaggagatagaggaaatagtgataaacaaatgtaaactaatt |
35161 |
T |
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Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 39402530 - 39402340
Alignment:
| Q |
17 |
agattggacattttaaattttaaatcgtgtattactgtacaaatgcaaggatcgatatccattgtttgaaaactaaaatataggataaaatgatcctaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39402530 |
agattggacattttaaattttaaatcgtgtattactgtacaaatgcaaggat----atccattgtttgaaaactaaaatataggataaaatgatcctaaa |
39402435 |
T |
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| Q |
117 |
tgtatattaccttacataaacttaactgaactcaagtgcaattaatgtttaagtaggagatagaggaaatagtgataaacaaatgtaaactaatt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39402434 |
tgtatattaccttacataaacttaactgaactcaagtgcaattaatgtttaagtaggagatagaggaaatagtgataaacaaatgtaaactaatt |
39402340 |
T |
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