View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10698_low_68 (Length: 216)
Name: NF10698_low_68
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10698_low_68 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 2875655 - 2875455
Alignment:
| Q |
1 |
catactcttattaggaagcaggctctacaccaaattcttcaccatcaagtgcaggtgaagaacgtgtactttccaagtctcaaacaatatgttgatatat |
100 |
Q |
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| T |
2875655 |
catactcttattaggaagcaggctcttcaccaaattcttcaccatcaagtgcaggtgaagaacgtgtactttccaagtctcaaacaatatgttgatatat |
2875556 |
T |
|
| Q |
101 |
ggaaagaacttcattttctccacatgtaatatcgttttcccacctacnnnnnnnttaaaacaaaattaaggaacaagggttaagtaaaatttgctataac |
200 |
Q |
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| T |
2875555 |
ggaaagaacttcattttctccacatgtaatatcgttttcccacctac-aaaaaattaaaacaaaattaaggaacaatggttaagtaaaatttgctataac |
2875457 |
T |
|
| Q |
201 |
tg |
202 |
Q |
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|| |
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| T |
2875456 |
tg |
2875455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 3 - 201
Target Start/End: Complemental strand, 2858049 - 2857855
Alignment:
| Q |
3 |
tactcttattaggaagcaggctctacaccaaattcttcaccatcaagtgcaggtgaagaacgtgtactttccaagtctcaaacaatatgttgatatatgg |
102 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2858049 |
tactcttattaggaagcaggctcttcaccaaattcttcaccag-aagtgcaggtgaagaacgtgtactttccaagtctcaaacaatatgttgagatatgg |
2857951 |
T |
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| Q |
103 |
aaagaacttcattttctccacatgtaatatcgttttcccacctacnnnnnnnttaaaacaaaattaaggaacaagggttaagtaaaatttgctataact |
201 |
Q |
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| T |
2857950 |
aaagaacttcattttctccacatgtaatatcgttttcccacctac-aaaaaattaaaac--aattaaggaacaatggttaagtaaaatttgctataact |
2857855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 3 - 201
Target Start/End: Complemental strand, 2846228 - 2846034
Alignment:
| Q |
3 |
tactcttattaggaagcaggctctacaccaaattcttcaccatcaagtgcaggtgaagaacgtgtactttccaagtctcaaacaatatgttgatatatgg |
102 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
2846228 |
tactcttattaggaagcaggctcttcaccaaattcttcaccag-aagtgcaggtgaagaacgtgtactttccaactctcaaacaatatgttgagatatgg |
2846130 |
T |
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| Q |
103 |
aaagaacttcattttctccacatgtaatatcgttttcccacctacnnnnnnnttaaaacaaaattaaggaacaagggttaagtaaaatttgctataact |
201 |
Q |
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| T |
2846129 |
aaagaacttcattttctccacatgtaatatcgttttcccacctac-aaaaaattaaaac--aattaaggaacaatggttaagtaaaatttgctataact |
2846034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 8528005 - 8528049
Alignment:
| Q |
3 |
tactcttattaggaagcaggctctacaccaaattcttcaccatca |
47 |
Q |
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||||||| |||||||||||||||| | ||||| |||||||||||| |
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| T |
8528005 |
tactcttcttaggaagcaggctcttcgccaaactcttcaccatca |
8528049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 9442172 - 9442216
Alignment:
| Q |
3 |
tactcttattaggaagcaggctctacaccaaattcttcaccatca |
47 |
Q |
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||||||| |||||||||||||||| ||||||| |||||||||||| |
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| T |
9442172 |
tactcttcttaggaagcaggctcttcaccaaactcttcaccatca |
9442216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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