View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10698_low_69 (Length: 216)
Name: NF10698_low_69
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10698_low_69 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-100; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 34305006 - 34304819
Alignment:
| Q |
15 |
caaaggttcaccaataccatccatggattcccccgtccctctcttatccgatcatttcccagatccattttgcgtcatgaaacaaacctcctttggagtt |
114 |
Q |
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| T |
34305006 |
caaaggttcaccaataccatccatggattcccccatccctctcttatccgatcatttcccagatccattttgcgtcatgaaacaaacctcctttggagtt |
34304907 |
T |
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| Q |
115 |
gagaaagaccaaccagcaatgacactgtcaccggttaaagtagactggaaggaaactccagaaggacatgtcataacgatggacgtgc |
202 |
Q |
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| T |
34304906 |
gagaaagaccaaccagcaatgacactgtcaccggttaaagtagactggaaggaaactccagaaggacatgtcataacgatggacgtgc |
34304819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 26 - 202
Target Start/End: Original strand, 33426076 - 33426252
Alignment:
| Q |
26 |
caataccatccatggattcccccgtccctctcttatccgatcatttcccagatccattttgcgtcatgaaacaaacctcctttggagttgagaaagacca |
125 |
Q |
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| T |
33426076 |
caatgccatccatggattccccaaaccctctcttagctgatcatttcccagacccattttgtgtcatggaacaaacctactttggagttgagaaagacca |
33426175 |
T |
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| Q |
126 |
accagcaatgacactgtcaccggttaaagtagactggaaggaaactccagaaggacatgtcataacgatggacgtgc |
202 |
Q |
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| T |
33426176 |
atcagccatgacattgtcaccggttaaagtagactggaaggaaactccagaagaacatgttatagtgatggacgtgc |
33426252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 64 - 190
Target Start/End: Original strand, 34311839 - 34311965
Alignment:
| Q |
64 |
gatcatttcccagatccattttgcgtcatgaaacaaacctcctttggagttgagaaagaccaaccagcaatgacactgtcaccggttaaagtagactgga |
163 |
Q |
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| T |
34311839 |
gatcgtttccccgatccatttcgtgtcttagaacaaatcccctttggagttgaaaaaaacgaaccatccatgtcactgtcaccagctagagtagactgga |
34311938 |
T |
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| Q |
164 |
aggaaactccagaaggacatgtcataa |
190 |
Q |
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| T |
34311939 |
aggaaactccagagggacatgttataa |
34311965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 138
Target Start/End: Original strand, 34314256 - 34314360
Alignment:
| Q |
34 |
tccatggattcccccgtccctctcttatccgatcatttcccagatccattttgcgtcatgaaacaaacctcctttggagttgagaaagaccaaccagcaa |
133 |
Q |
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| T |
34314256 |
tccatggattctcccaatcctctcttagctgatcatttcccagaccgattttgcgtcacggaacaaatcccctatggagttgagatagaccaatcagcca |
34314355 |
T |
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| Q |
134 |
tgaca |
138 |
Q |
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||||| |
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| T |
34314356 |
tgaca |
34314360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 126
Target Start/End: Complemental strand, 34317482 - 34317390
Alignment:
| Q |
34 |
tccatggattcccccgtccctctcttatccgatcatttcccagatccattttgcgtcatgaaacaaacctcctttggagttgagaaagaccaa |
126 |
Q |
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||||||||||| ||| ||||||||| | |||||||||||||| | || |||||||||| || ||| | ||||||||||||||||||||||| |
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| T |
34317482 |
tccatggattctcccaatcctctcttagctgatcatttcccagaccaatattgcgtcatggaagaaatcccctttggagttgagaaagaccaa |
34317390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 34323063 - 34323006
Alignment:
| Q |
133 |
atgacactgtcaccggttaaagtagactggaaggaaactccagaaggacatgtcataa |
190 |
Q |
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| T |
34323063 |
atgacaatgtcaccagctagagtagactggaaggaaactccagatggacatgttataa |
34323006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 10 - 138
Target Start/End: Complemental strand, 25651639 - 25651511
Alignment:
| Q |
10 |
agaagcaaaggttcaccaataccatccatggattcccccgtccctctcttatccgatcatttcccagatccattttgcgtcatgaaacaaacctcctttg |
109 |
Q |
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|||| ||||||||||| | |||| ||||||||||| ||| ||||||||| | |||||||||||| | |||||||| ||| | |||||||| |||||| |
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| T |
25651639 |
agaaccaaaggttcactattaccttccatggattctcccaatcctctcttagctgatcatttcccaaacccattttgggtcgcggaacaaaccccctttg |
25651540 |
T |
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| Q |
110 |
gagttgagaaagaccaaccagcaatgaca |
138 |
Q |
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| T |
25651539 |
gaattgagaaagaccaatcagccatgaca |
25651511 |
T |
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