View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10698_low_70 (Length: 213)
Name: NF10698_low_70
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10698_low_70 |
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Alignment Details
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 53 - 201
Target Start/End: Original strand, 9684722 - 9684870
Alignment:
| Q |
53 |
ccccatctgttttgttcctctcatcaaaccacactgtcaacgtagctttcctattctcattagccgtgaaatcatgcatatgtgccatacgcacaacttc |
152 |
Q |
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| T |
9684722 |
ccccatctattttgttcctctcatcaacccacactttcaacgtagctttcctattctcattagccatgaaatcatgcatatgtaccatacgcacagcttc |
9684821 |
T |
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| Q |
153 |
cccatacttagacttcacaatctcaatcagctcatgattcaactcccta |
201 |
Q |
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| T |
9684822 |
cccatacttagacttcacaatttcaatcagctcatgattcaactcccta |
9684870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 190
Target Start/End: Original strand, 9688768 - 9688905
Alignment:
| Q |
53 |
ccccatctgttttgttcctctcatcaaaccacactgtcaacgtagctttcctattctcattagccgtgaaatcatgcatatgtgccatacgcacaacttc |
152 |
Q |
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|||||||||||||||||||||||||| ||| ||| |||||| | || |||| ||||||| || |||||||| || ||||| |||||| ||| | |
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| T |
9688768 |
ccccatctgttttgttcctctcatcagtccaaactttcaacgcaactctccttttctcatccaccatgaaatcaatcacatgtgacatacgaacatgaac |
9688867 |
T |
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| Q |
153 |
cccatacttagacttcacaatctcaatcagctcatgat |
190 |
Q |
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| T |
9688868 |
ctcatacttagacttaataaactcaatcagctcctgat |
9688905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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