View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10698_low_72 (Length: 208)
Name: NF10698_low_72
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10698_low_72 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 112 - 193
Target Start/End: Original strand, 30943434 - 30943515
Alignment:
| Q |
112 |
aaacgagaaaacacaacatttgaatatttttcttgtcatcattatttattttcaaagtcatcgatattaagatatactctct |
193 |
Q |
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| T |
30943434 |
aaacgagaaaacacaacatttgaatatttttcttgtcatcattatttattttcaaagtcatcgatattaagatattctctct |
30943515 |
T |
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Target: scaffold0002 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 413949 - 413877
Alignment:
| Q |
119 |
aaaacacaacatttgaatatttttcttgtcatcattatttattttcaaagtcatcgatattaagatatactct |
191 |
Q |
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| T |
413949 |
aaaacacaacctttgaacatttttcttgtcatcgttatttattttcaaagtcatcgatattaatatatactct |
413877 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 45331009 - 45331066
Alignment:
| Q |
123 |
cacaacatttgaatatttttcttgtcatcattatttattttcaaagtcatcgatattaa |
181 |
Q |
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| T |
45331009 |
cacaacctttgaacatttttct-gtcatcattatatattttcaaagtcatcgatattaa |
45331066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 121 - 187
Target Start/End: Original strand, 11199861 - 11199927
Alignment:
| Q |
121 |
aacacaacatttgaatatttttcttgtcatcattatttattttcaaagtcatcgatattaagatata |
187 |
Q |
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| T |
11199861 |
aacacaccctttgaatacttttctcgtcaacattatttattgtcaaagtcatcgatgttaatatata |
11199927 |
T |
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