View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10698_low_74 (Length: 206)
Name: NF10698_low_74
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10698_low_74 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 9 - 189
Target Start/End: Complemental strand, 54303439 - 54303259
Alignment:
| Q |
9 |
aagcagagataagttttcctgattttctgaaatttaagatttgccttcgaatttcatctagtttaccccagccagtgttcaaattttggatattgagata |
108 |
Q |
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| T |
54303439 |
aagcaaagataagttttcctgattttctgaaatttaagatttgccttcgaatttcatctagtttaccccaaccagtgttcaaattttggatattgagata |
54303340 |
T |
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| Q |
109 |
tacaacataaatacgaggatcatacatggctttcaacaaattatcgcaaatttgaagaacactgccgtttttaacacactc |
189 |
Q |
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| T |
54303339 |
tacaacataaatacgaggatcatacatggctttcaacaaattatcgcaaatttgaagaacactgccgtttttaacacactc |
54303259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 45883384 - 45883520
Alignment:
| Q |
26 |
cctgattttctgaaatttaagatttgccttcgaatttcatctagtttaccccagccagtgttcaaattttggatattgagatatacaacataaatacgag |
125 |
Q |
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||||||||||||||||||||||| || |||||||||||||| |||||| |||| || || ||||| | || | ||||| ||| || ||||||||| |
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| T |
45883384 |
cctgattttctgaaatttaagatctgtcttcgaatttcatcgagtttagcccaaccgcaatttaaattgtcaatttgaagatacacaccagaaatacgag |
45883483 |
T |
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| Q |
126 |
gatcatacatggctttcaacaaattatcgcaaatttg |
162 |
Q |
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| T |
45883484 |
gatcataagctgctttcaacaaattatcgcaaatttg |
45883520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 56209685 - 56209744
Alignment:
| Q |
19 |
aagttttcctgattttctgaaatttaagatttgccttcgaatttcatctagtttacccca |
78 |
Q |
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| T |
56209685 |
aagtttaccagattttctgaaatttaagatttgccttcgaatttcatcgagtttagccca |
56209744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 45863436 - 45863572
Alignment:
| Q |
26 |
cctgattttctgaaatttaagatttgccttcgaatttcatctagtttaccccagccagtgttcaaattttggatattgagatatacaacataaatacgag |
125 |
Q |
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||||||||||||||||| |||||||| |||||||||||||| |||| |||| ||| || ||||| | || | |||||||| || ||||||||| |
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| T |
45863436 |
cctgattttctgaaattcaagatttgtcttcgaatttcatcagctttagcccaaccacaatttaaattatcaatttgaagatatacggcagaaatacgag |
45863535 |
T |
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| Q |
126 |
gatcatacatggctttcaacaaattatcgcaaatttg |
162 |
Q |
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| T |
45863536 |
gatcataagctgctttcaacaaattatctcaaatttg |
45863572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 47292516 - 47292468
Alignment:
| Q |
17 |
ataagttttcctgattttctgaaatttaagatttgccttcgaatttcat |
65 |
Q |
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| T |
47292516 |
ataagttttcctgattttctgaaattcatgatttcctttcgaatttcat |
47292468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 7973592 - 7973648
Alignment:
| Q |
17 |
ataagttttcctgattttctgaaatttaagatttgccttcgaatttcatctagttta |
73 |
Q |
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| T |
7973592 |
ataagtttacctgattttctgaaatttatgatttccctttgaatttcatcgagttta |
7973648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 7973692 - 7973738
Alignment:
| Q |
117 |
aaatacgaggatcatacatggctttcaacaaattatcgcaaatttga |
163 |
Q |
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| T |
7973692 |
aaatacgaggatcataagcggctttcaacaaattctcgcaaatttga |
7973738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 24348540 - 24348488
Alignment:
| Q |
26 |
cctgattttctgaaatttaagatttgccttcgaatttcatctagtttacccca |
78 |
Q |
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||||||||| ||||||| ||||| |||||||||||||| |||| ||||||||| |
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| T |
24348540 |
cctgattttttgaaattcaagatgtgccttcgaatttcttctactttacccca |
24348488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 10520360 - 10520311
Alignment:
| Q |
29 |
gattttctgaaatttaagatttgccttcgaatttcatctagtttacccca |
78 |
Q |
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||||||||||||||||| ||||||||| |||| ||||| |||||| |||| |
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| T |
10520360 |
gattttctgaaatttaaaatttgcctttgaatctcatcaagtttagccca |
10520311 |
T |
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