View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10698_low_8 (Length: 438)
Name: NF10698_low_8
Description: NF10698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10698_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 17 - 424
Target Start/End: Complemental strand, 17471114 - 17470707
Alignment:
| Q |
17 |
gttgcatattgtgatgtcaaaaccactactgagcttcttgatcttggacttgccgatgtaaatcataaaaatcttaggggctacagcgtgctacatgttg |
116 |
Q |
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| T |
17471114 |
gttgcatattgtgatgtcaaaaccactaccgagcttcttgatcttggacttgctgatgtaaatcataaaaaccttaggggatacagcgtgctacatgttg |
17471015 |
T |
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| Q |
117 |
ctgcgaagagaaaagaaccgaagattattgtatctttgttaacgaagggagctcaaccttctgaactcactatggatggcagaaaagctcttcagatttc |
216 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17471014 |
ctgctaagagaaaagaaccgaaaattattgtatctttgttaacgaagggagctcaaccttctgaactcactatggatggcagaaaagctcttcagatttc |
17470915 |
T |
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| Q |
217 |
aaagcgttgtacgaaagctgtggattattataaatctactgaggaagcaaaggtttcttcgaatgatcgattatgtatagagatattagagcaagctgag |
316 |
Q |
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| T |
17470914 |
aaaacgttgtacgaaagctgtggattattataaatctactgaggaaggaaaagtttcttcgaatgatcgattgtgcatagagatattggagcaagctgag |
17470815 |
T |
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| Q |
317 |
ataagggagcctttgcatggggaggcatctctttctcttgctaaggcaggtgatgatttgcgtatgaaattgttgtacctagaaaaccgaggtattttct |
416 |
Q |
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| T |
17470814 |
agaagggagcctttacatggggaggcatctctttctcttgctaaggcaggggatgatttgcgtatgaaattgttgtacctggaaaaccgaggtactttcc |
17470715 |
T |
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| Q |
417 |
tacatgtt |
424 |
Q |
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| T |
17470714 |
tacatgtt |
17470707 |
T |
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