View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10699_high_3 (Length: 288)
Name: NF10699_high_3
Description: NF10699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10699_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 46700710 - 46700786
Alignment:
| Q |
1 |
tcaaaaatagcaaataaaaacacaaattgaattgttcaagtttcaaccacttcacttaaattaaaaaccccacatgc |
77 |
Q |
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| T |
46700710 |
tcaaaaatagcaaataaaaacacaaattgaattgttcaagtttcaaccacttcacttaaattaaaaaccccacatgc |
46700786 |
T |
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Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 204 - 270
Target Start/End: Original strand, 46700913 - 46700979
Alignment:
| Q |
204 |
tgggaatggttaggggtgaaagtgaaacaaaccacttctaacttggaaacaggggtgttcttctctg |
270 |
Q |
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| T |
46700913 |
tgggaatggttaggggtgaaagtgaaacaaaccacttctaacttggaaacaggggtgttcttctctg |
46700979 |
T |
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