View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10699_low_10 (Length: 314)
Name: NF10699_low_10
Description: NF10699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10699_low_10 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 91 - 314
Target Start/End: Original strand, 3857412 - 3857634
Alignment:
| Q |
91 |
aatcttaaatgatcttaaactaattttaattatttttcaactatattaacggtattctctctatttttgatgaatttatatacaaacaggttaaaaattg |
190 |
Q |
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| T |
3857412 |
aatcttaaatgatcttaaactaattttaattatttttcaactatattaacggtattctctctatttttgatgaatttatatacaaacagtttaaaaattg |
3857511 |
T |
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| Q |
191 |
acgaattgtataccaatgtagctaatgtgtttaatttattaattactagttaatttgagaaaaagaaagaagggtagggggttgaaaatctcagcaaaaa |
290 |
Q |
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| T |
3857512 |
acgaattgtataccaatgtagctaatgtgtttaatttattaattactagttaatttgagaaaaagaaagaagggtagggggttgaaaatctcagc-aaaa |
3857610 |
T |
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| Q |
291 |
attaatcagctttaagtataggtt |
314 |
Q |
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|||| ||||||||||||||||||| |
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| T |
3857611 |
attattcagctttaagtataggtt |
3857634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 18082337 - 18082261
Alignment:
| Q |
46 |
taactaatatagccaactaactgttaatcacaactaacttttaacaatcttaaatgatcttaaactaattttaatta |
122 |
Q |
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||||||||||| ||||||||| |||||||||||||||| |||| | |||||| | ||||||||||| |||||| |
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| T |
18082337 |
taactaatataaccaactaacaactaatcacaactaacttctaaccaccttaaactacattaaactaattctaatta |
18082261 |
T |
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