View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10699_low_12 (Length: 294)
Name: NF10699_low_12
Description: NF10699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10699_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 12885063 - 12885345
Alignment:
| Q |
1 |
aaatcatcaaacaattcctttaactaatagtaaaaaatattatatctgcatttactaaaagatcttcacgccttgtttcccaaaaaacattaccaaca-- |
98 |
Q |
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| T |
12885063 |
aaatcatcaaacaattcctttaactaatagtaaaaaatattatatctgcatttactaaaagatcttcacgccttgtttcccaaaaaacattaccaacaaa |
12885162 |
T |
|
| Q |
99 |
--atcatagagaaaaaatccaaaggttgacatgattctccttagattcaaatcaaacacagatgtttatagtaccaaaatacaatgcttaaaattgtaga |
196 |
Q |
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| T |
12885163 |
caatcatagagaaaaaatccaaaggctgacatgattctccttagattcaaatcaaacacagatgtttatagtaccaaaatacaatgcttaaaattgtaga |
12885262 |
T |
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| Q |
197 |
gcaaatatgtgttcaacttaacatctagttagtatcttaaagaacaatagaacaaacaactaatgggttcttcctataattga |
279 |
Q |
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| T |
12885263 |
gcaaatatgtgttcaacttaacatctagttagtatcttaaagaacaacacaacaaacaactaatgggttcttcctataattga |
12885345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 198
Target Start/End: Complemental strand, 12992675 - 12992560
Alignment:
| Q |
84 |
aaaacattaccaacaatcatagagaaaaaatccaaaggttga-catgattctccttagattcaaatcaaacacagatgtttatagtaccaaaatacaatg |
182 |
Q |
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| T |
12992675 |
aaaacattacaaacaatcatatagtaaaaatccaaaggttgatcatgatgttgcttagattcaaatgaaacatagaagtttacaagaacaaaatacaaag |
12992576 |
T |
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| Q |
183 |
cttaaaattgtagagc |
198 |
Q |
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| T |
12992575 |
cttaaaatcgtagagc |
12992560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 12914294 - 12914371
Alignment:
| Q |
82 |
aaaaaacattaccaacaatcatagagaaaaaatccaaaggttgacatgattctccttagattcaaatcaaacacagat |
159 |
Q |
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| T |
12914294 |
aaaaaacattaccaacaatcatagaacaaaaatccaaaggttgacacgatacctcttaggttaaaatcaaatacagat |
12914371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 196
Target Start/End: Complemental strand, 12943033 - 12942932
Alignment:
| Q |
95 |
aacaatcatagagaaaaaatccaaaggttgacatgattctccttagattcaaatcaaacacagatgtttatagtaccaaaatacaatgcttaaaattgta |
194 |
Q |
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|||||||||||| ||| |||| |||| ||||| || || ||||| ||||||||||| ||| ||||||| | |||||||||||| ||||||| |||||| |
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| T |
12943033 |
aacaatcatagaacaaatatccgaaggctgacaatatacttcttaggttcaaatcaaatacaaatgtttacaataccaaaatacattgcttaatattgta |
12942934 |
T |
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| Q |
195 |
ga |
196 |
Q |
| |
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|| |
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| T |
12942933 |
ga |
12942932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 12921556 - 12921632
Alignment:
| Q |
1 |
aaatcatcaaacaattcctttaactaatagtaaaaaatattatatctgcatttactaaaagatcttcacgccttgtt |
77 |
Q |
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||||||||||||| ||| ||||| ||||||||||||||| |||| ||||| |||||| | ||||||| |||||||| |
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| T |
12921556 |
aaatcatcaaacagttcttttaaataatagtaaaaaataacatatttgcatgtactaatatatcttcaagccttgtt |
12921632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 14071132 - 14071072
Alignment:
| Q |
130 |
attctccttagattcaaatcaaacacagatgtttatagtaccaaaatacaatgcttaaaat |
190 |
Q |
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||||| ||||||||||||||||| ||| |||||||| ||| |||||||||||||||||||| |
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| T |
14071132 |
attctacttagattcaaatcaaatacaaatgtttatggtaacaaaatacaatgcttaaaat |
14071072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 14073919 - 14073859
Alignment:
| Q |
130 |
attctccttagattcaaatcaaacacagatgtttatagtaccaaaatacaatgcttaaaat |
190 |
Q |
| |
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||||| ||||||||||||||||| ||| |||||||| ||| |||||||||||||||||||| |
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| T |
14073919 |
attctacttagattcaaatcaaatacaaatgtttatggtaacaaaatacaatgcttaaaat |
14073859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 190
Target Start/End: Complemental strand, 14069593 - 14069500
Alignment:
| Q |
98 |
aatcatagagaaaaaatccaaaggttgac-atgattctccttagattcaaatcaaacacagatgtttatagtaccaaaatacaatgcttaaaat |
190 |
Q |
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|||||||||| |||||| ||||||||||| | ||||| ||||||||||||| ||| || |||||||| ||| |||||| ||||||||||||| |
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| T |
14069593 |
aatcatagagcaaaaattcaaaggttgactaaaattctacttagattcaaattaaatgcaaatgtttattgtaacaaaatgcaatgcttaaaat |
14069500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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