View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10699_low_15 (Length: 274)

Name: NF10699_low_15
Description: NF10699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10699_low_15
NF10699_low_15
[»] chr4 (3 HSPs)
chr4 (84-261)||(6743950-6744127)
chr4 (89-257)||(28021924-28022090)
chr4 (97-196)||(14207708-14207807)
[»] chr7 (3 HSPs)
chr7 (84-248)||(4411436-4411594)
chr7 (150-212)||(42302835-42302897)
chr7 (161-254)||(27964648-27964740)
[»] chr6 (5 HSPs)
chr6 (117-193)||(13154370-13154446)
chr6 (117-193)||(13159226-13159302)
chr6 (129-174)||(22997595-22997640)
chr6 (129-174)||(23790763-23790808)
chr6 (129-173)||(18144031-18144075)
[»] chr8 (3 HSPs)
chr8 (116-257)||(43720525-43720664)
chr8 (116-196)||(36243551-36243630)
chr8 (161-254)||(14836949-14837041)
[»] chr3 (2 HSPs)
chr3 (122-196)||(14956649-14956723)
chr3 (161-259)||(32075972-32076069)
[»] chr2 (2 HSPs)
chr2 (161-254)||(32280552-32280644)
chr2 (97-196)||(31407926-31408025)
[»] chr5 (1 HSPs)
chr5 (150-201)||(2369072-2369123)


Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 84 - 261
Target Start/End: Original strand, 6743950 - 6744127
Alignment:
Q  84 gtgtaaagtttccagctttgattaattctccatttacatctttgattgaatatctcattatatttcactttcaccactcatgttctttttgagttacaaa 183  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6743950 gtgtaaagtttccagctttaattaattctccatttacatctttgattgaatatctcattatatttcactttcaccactcatgttctttttgagttacaaa 6744049  T
Q  184 tgtgtgttttagatttagactttaaaattttctttgttcccgttacattcttgaatgaattcttttcttttattttct 261  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6744050 tgtgtgttttagatttagactttaaaattttctttgttgccgttacattcttgaatgaattcttttcttttattttct 6744127  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 89 - 257
Target Start/End: Original strand, 28021924 - 28022090
Alignment:
Q  89 aagtttccagctttgattaattctccatttacatctttgattgaatatctcattatatttcactttcaccactcatgttctttttgagttacaaatgtgt 188  Q
    |||||| |||||||  ||| |||| | ||||||| |||||||||||  ||||||  |||| ||||| || ||||||  |||| ||| ||||||||||||     
T  28021924 aagttttcagctttagttacttcttcttttacatgtttgattgaatgcctcattggattttacttttacaactcat--tcttcttgggttacaaatgtga 28022021  T
Q  189 gttttagatttagactttaaaattttctttgttcccgttacattcttgaatgaattcttttcttttatt 257  Q
     || ||||||||| ||||  |||| |||   || ||||||||||||| |||||||||||||||||||||    
T  28022022 attctagatttaggctttggaattgtctcaatttccgttacattcttcaatgaattcttttcttttatt 28022090  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 196
Target Start/End: Complemental strand, 14207807 - 14207708
Alignment:
Q  97 agctttgattaattctccatttacatctttgattgaatatctcattatatttcactttcaccactcatgttctttttgagttacaaatgtgtgttttaga 196  Q
    |||||| |||| |||| | ||| ||| |||||||||||  ||| ||  |||||||||||| ||||||||| ||||||  |||||||  ||||||||||||    
T  14207807 agctttaattacttctacttttgcatgtttgattgaatgcctctttgaatttcactttcaacactcatgtcctttttttgttacaaccgtgtgttttaga 14207708  T

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Target: chr7 (Bit Score: 126; Significance: 5e-65; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 84 - 248
Target Start/End: Original strand, 4411436 - 4411594
Alignment:
Q  84 gtgtaaagtttccagctttgattaattctccatttacatctttgattgaatatctcattatatttcactttcaccactcatgttctttttgagttacaaa 183  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||| ||||||||    
T  4411436 gtgtaaagtttccagctttaattaattctccatttacatctttgattgaatatctcattatatttc------accactcatgttctttttgggttacaaa 4411529  T
Q  184 tgtgtgttttagatttagactttaaaattttctttgttcccgttacattcttgaatgaattcttt 248  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  4411530 tgtgtgttttagatttagactttaaaattttctttgtttctgttacattcttgaatgaattcttt 4411594  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 42302897 - 42302835
Alignment:
Q  150 actttcaccactcatgttctttttgagttacaaatgtgtgttttagatttagactttaaaatt 212  Q
    ||||| || |||||||||||||||| ||||||||||||||||||| |||||| |||| |||||    
T  42302897 acttttacaactcatgttctttttgggttacaaatgtgtgttttatatttaggctttgaaatt 42302835  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 254
Target Start/End: Complemental strand, 27964740 - 27964648
Alignment:
Q  161 tcatgttctttttgagttacaaatgtgtgttttagatttagactttaaaattttctttgttcccgttacattcttgaatgaattcttttctttt 254  Q
    |||||||||||||| ||| ||||||| ||||||||| |||| |||||||||| |||    |||  |||||||||||||||||||||||| ||||    
T  27964740 tcatgttctttttgggtttcaaatgt-tgttttagaattaggctttaaaattgtctccactccttttacattcttgaatgaattcttttatttt 27964648  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 13154446 - 13154370
Alignment:
Q  117 ttacatctttgattgaatatctcattatatttcactttcaccactcatgttctttttgagttacaaatgtgtgtttt 193  Q
    |||||| |||||||||||  ||||||  |||||||||||| | ||||||||||||||| ||||||||||||||||||    
T  13154446 ttacatgtttgattgaatgcctcattggatttcactttcaacgctcatgttctttttgtgttacaaatgtgtgtttt 13154370  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 13159302 - 13159226
Alignment:
Q  117 ttacatctttgattgaatatctcattatatttcactttcaccactcatgttctttttgagttacaaatgtgtgtttt 193  Q
    |||||| |||||||||||  ||||||  |||||||||||| | ||||||||||||||| ||||||||||||||||||    
T  13159302 ttacatgtttgattgaatgcctcattggatttcactttcaacgctcatgttctttttgtgttacaaatgtgtgtttt 13159226  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 22997595 - 22997640
Alignment:
Q  129 ttgaatatctcattatatttcactttcaccactcatgttctttttg 174  Q
    ||||||||||||||  |||| ||||||||||||||| |||||||||    
T  22997595 ttgaatatctcattggatttaactttcaccactcatattctttttg 22997640  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 23790808 - 23790763
Alignment:
Q  129 ttgaatatctcattatatttcactttcaccactcatgttctttttg 174  Q
    ||||||||||||||  |||| ||||||||||||||| |||||||||    
T  23790808 ttgaatatctcattggatttaactttcaccactcatattctttttg 23790763  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 18144031 - 18144075
Alignment:
Q  129 ttgaatatctcattatatttcactttcaccactcatgttcttttt 173  Q
    ||||||||||||||  |||| ||||||||||||||| ||||||||    
T  18144031 ttgaatatctcattggatttaactttcaccactcatattcttttt 18144075  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 257
Target Start/End: Original strand, 43720525 - 43720664
Alignment:
Q  116 tttacatctttgattgaatatctcattatatttcactttcaccactcatgttctttttgagttacaaatgtgtgttttagatttagactttaaaattttc 215  Q
    ||||||| |||||||||||  ||||||  |||| ||||| || ||||||  |||| ||| |||||||||||| ||| ||||||||| ||||  |||| ||    
T  43720525 tttacatgtttgattgaatgcctcattggattttacttttacaactcat--tcttcttgggttacaaatgtgagttctagatttaggctttggaattgtc 43720622  T
Q  216 tttgttcccgttacattcttgaatgaattcttttcttttatt 257  Q
    |   || ||| ||||||||| |||||||||||||||||||||    
T  43720623 tcaatttccgctacattcttcaatgaattcttttcttttatt 43720664  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 36243630 - 36243551
Alignment:
Q  116 tttacatctttgattgaatatctcattatatttcactttcaccactcatgttctttttgagttacaaatgtgtgttttaga 196  Q
    ||||||| |||||||||||  ||||||  |||||||||||| ||||||||  ||||| | |||||||||||||||||||||    
T  36243630 tttacatgtttgattgaatgcctcattg-atttcactttcaacactcatgcccttttcgtgttacaaatgtgtgttttaga 36243551  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 254
Target Start/End: Original strand, 14836949 - 14837041
Alignment:
Q  161 tcatgttctttttgagttacaaatgtgtgttttagatttagactttaaaattttctttgttcccgttacattcttgaatgaattcttttctttt 254  Q
    |||||||||||||| ||| ||||||| ||||||||| |||| |||||||||| |||    |||  |||||||||| ||||||||||||| ||||    
T  14836949 tcatgttctttttgggtttcaaatgt-tgttttagaattaggctttaaaattgtctccactccttttacattcttcaatgaattcttttatttt 14837041  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 196
Target Start/End: Complemental strand, 14956723 - 14956649
Alignment:
Q  122 tctttgattgaatatctcattatatttcactttcaccactcatgttctttttgagttacaaatgtgtgttttaga 196  Q
    ||||||||||||| |||||||   ||||||||||| ||||||||  ||||||| |||||||||||||||||||||    
T  14956723 tctttgattgaatgtctcattgattttcactttcaacactcatgccctttttgcgttacaaatgtgtgttttaga 14956649  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 259
Target Start/End: Complemental strand, 32076069 - 32075972
Alignment:
Q  161 tcatgttctttttgagttacaaatgtgtgttttagatttagactttaaaattttctttgttcccgttacattcttgaatgaattcttttcttttatttt 259  Q
    |||||||||||||  |||||||||| |||||||||| |||| |||| ||||| |||    |||  |||||||||| ||||||||||||| |||| ||||    
T  32076069 tcatgttctttttaggttacaaatg-gtgttttagaattaggctttgaaattatctccactccttttacattctttaatgaattcttttattttctttt 32075972  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 254
Target Start/End: Original strand, 32280552 - 32280644
Alignment:
Q  161 tcatgttctttttgagttacaaatgtgtgttttagatttagactttaaaattttctttgttcccgttacattcttgaatgaattcttttctttt 254  Q
    |||||||||||||| ||||||||||| ||||||||| |||| |||||||||| |||    |||  |||||||||| ||||||||||||| ||||    
T  32280552 tcatgttctttttgggttacaaatgt-tgttttagaattaggctttaaaattgtctccactccttttacattcttcaatgaattcttttatttt 32280644  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 196
Target Start/End: Complemental strand, 31408025 - 31407926
Alignment:
Q  97 agctttgattaattctccatttacatctttgattgaatatctcattatatttcactttcaccactcatgttctttttgagttacaaatgtgtgttttaga 196  Q
    |||||| |||| |||| | ||| ||| |||||||||||  ||| ||  |||||||||||| ||||||||| ||||||  |||||||  ||||||||||||    
T  31408025 agctttaattacttctacttttgcatgtttgattgaatgcctctttgaatttcactttcaacactcatgtcctttttttgttacaaccgtgtgttttaga 31407926  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 2369123 - 2369072
Alignment:
Q  150 actttcaccactcatgttctttttgagttacaaatgtgtgttttagatttag 201  Q
    ||||| || |||||||||||||||| |||||||||||| |||||| ||||||    
T  2369123 acttttacaactcatgttctttttgggttacaaatgtgcgttttatatttag 2369072  T

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