View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10699_low_2 (Length: 452)
Name: NF10699_low_2
Description: NF10699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10699_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 204 - 437
Target Start/End: Original strand, 31232049 - 31232282
Alignment:
| Q |
204 |
accttagtcttgacaacagctttagccttgggcttagggccgggcttggccttcactgccgtcaccttagcaactgcctttgtctttggcttagcggctg |
303 |
Q |
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| T |
31232049 |
accttagtcttgacaacagctttagccttgggcttagggccgggcttggccttcactgccgtcaccttagcaactgcctttgtctttggcttagcggctg |
31232148 |
T |
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| Q |
304 |
caggctttttctccgctgatggtttcgtcgctggagaaagcttgaatgaacctttaaccttaataagctttccagaagcaacgttcttcttcaaattatg |
403 |
Q |
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| T |
31232149 |
caggctttttctccgctgatggtttcgtcgccggagaaagcttgaatgaacctttaaccttaataagctttccagaagcaacgttcttcttcaaattatg |
31232248 |
T |
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| Q |
404 |
aagcaatagcttcttgaaatttgaaggaagctgt |
437 |
Q |
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| T |
31232249 |
aagcaatagcttcttgaaatttgaaggaagctgt |
31232282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 31231861 - 31231948
Alignment:
| Q |
16 |
cagcaacaactttcttccccggagttgtcctcgtcgacgtccttgaagccttagcaggtttcacaactgtctttgccttggcagcagg |
103 |
Q |
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| T |
31231861 |
cagcaacaactttcttccccggagttgtcctcgtcgacgtccttgaagccttagcaggtttcacaactgtctttgccttggcagcagg |
31231948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 342 - 437
Target Start/End: Complemental strand, 31173513 - 31173418
Alignment:
| Q |
342 |
agcttgaatgaacctttaaccttaataagctttccagaagcaacgttcttcttcaaattatgaagcaatagcttcttgaaatttgaaggaagctgt |
437 |
Q |
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| T |
31173513 |
agcttgaatgaacctttcaccttaacaagttttccagaagcaacattcttcttcaaattctgaagcaataacttcttgaaatttgaaggaagctgt |
31173418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 342 - 437
Target Start/End: Original strand, 31226941 - 31227036
Alignment:
| Q |
342 |
agcttgaatgaacctttaaccttaataagctttccagaagcaacgttcttcttcaaattatgaagcaatagcttcttgaaatttgaaggaagctgt |
437 |
Q |
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| T |
31226941 |
agcttgaatgaacctttcaccttaacaagttttccagaagcaacattcttcttcaaattctgaagcaataacttcttgaaatttgaaggaagctgt |
31227036 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 259
Target Start/End: Complemental strand, 31173589 - 31173542
Alignment:
| Q |
212 |
cttgacaacagctttagccttgggcttagggccgggcttggccttcac |
259 |
Q |
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| T |
31173589 |
cttgacaacagctttagcctttggcttagcggctggcttggccttcac |
31173542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 344 - 437
Target Start/End: Complemental strand, 32798203 - 32798113
Alignment:
| Q |
344 |
cttgaatgaacctttaaccttaataagctttccagaagcaacgttcttcttcaaattatgaagcaatagcttcttgaaatttgaaggaagctgt |
437 |
Q |
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| T |
32798203 |
cttgaatgaacctttcaccttaacgagctttccagaagcaac---attcttcaaactctgaaacaataatttcttgaaatttgatggaagctgt |
32798113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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