View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10699_low_20 (Length: 250)
Name: NF10699_low_20
Description: NF10699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10699_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 34980704 - 34980465
Alignment:
| Q |
1 |
taattcaactagtttagttggtcttatcttaatcaattccatgtcccgagaagcttcaatcggaaaaccttggccaaaaacttcctttgttgacattgga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34980704 |
taattcaactagtttagttggtcttatcttaatcaattccatgtcccgagaagcttcaatcggaaaaccttgtccaaaaacttcctttgttgacattgga |
34980605 |
T |
|
| Q |
101 |
ttttgatttcgacacgaatcaaaactaggtatagtttcaagatctccaacttcaaccatcttaacaattgcaattaacgatgcatcaacctgactaaatt |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34980604 |
ttttgatttcgacacaaatcaaaactaggtatagtttcaagatctccaacttcaaccatcttaacaattgcaattaacgatgcatcaacctgactaaatt |
34980505 |
T |
|
| Q |
201 |
gtttcaaatattcaatataatcaagaatttcgtacctatg |
240 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
34980504 |
gtttcaaatattcaatataatcaagaatttcgtacctatg |
34980465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 4 - 240
Target Start/End: Complemental strand, 34993103 - 34992867
Alignment:
| Q |
4 |
ttcaactagtttagttggtcttatcttaatcaattccatgtcccgagaagcttcaatcggaaaaccttggccaaaaacttcctttgttgacattggattt |
103 |
Q |
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|||||||||||||||||| ||||||||||||||| |||| ||||| ||| |||||||| | |||||||| |||||||| ||||||||||||||||||| | |
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| T |
34993103 |
ttcaactagtttagttggacttatcttaatcaatgccatatcccgtgaaccttcaatctgcaaaccttgtccaaaaacgtcctttgttgacattggatct |
34993004 |
T |
|
| Q |
104 |
tgatttcgacacgaatcaaaactaggtatagtttcaagatctccaacttcaaccatcttaacaattgcaattaacgatgcatcaacctgactaaattgtt |
203 |
Q |
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| T |
34993003 |
tggattcgacacgaatcaaaactaggcagtgtttgaagatctccaacttcaaccatcttaacaagctccattaatgatgcatcaacctgactaaattgtt |
34992904 |
T |
|
| Q |
204 |
tcaaatattcaatataatcaagaatttcgtacctatg |
240 |
Q |
| |
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||||||||||||||| ||| ||||||||||||||||| |
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| T |
34992903 |
tcaaatattcaatattatcgagaatttcgtacctatg |
34992867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 34985151 - 34984912
Alignment:
| Q |
1 |
taattcaactagtttagttggtcttatcttaatcaattccatgtcccgagaagcttcaatcggaaaaccttggccaaaaacttcctttgttgacattgga |
100 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||| | |||||||| ||||||||||| |||| |||||| | |
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| T |
34985151 |
taattcaactagtttagttggacttatcttaatcaatgccttgtcccgagaagcttcaatctgcaaaccttgttcaaaaacttccattgtatacattgaa |
34985052 |
T |
|
| Q |
101 |
ttttgatttcgacacgaatcaaaactaggtatagtttcaagatctccaacttcaaccatcttaacaattgcaattaacgatgcatcaacctgactaaatt |
200 |
Q |
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||||| ||||||||| ||||||||||||||| ||||| ||| |||||||||||||||| ||||||||| | | ||| | ||||||||| | ||||| |
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| T |
34985051 |
ttttggtttcgacacaaatcaaaactaggtaaagtttgaagctctccaacttcaaccaacttaacaatctccaataatgttgcatcaacacagccaaatt |
34984952 |
T |
|
| Q |
201 |
gtttcaaatattcaatataatcaagaatttcgtacctatg |
240 |
Q |
| |
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||||||||||||||| || ||| ||||||||||||||||| |
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| T |
34984951 |
gtttcaaatattcaaaatcatcgagaatttcgtacctatg |
34984912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 27542498 - 27542736
Alignment:
| Q |
4 |
ttcaactagtttagttggtcttatcttaatcaattccatgtcccgagaagcttcaatcggaaaaccttggccaaaaacttcctttgttgacattggattt |
103 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||| |||| ||||||||||| | |||||||| |||||||||| | |||| ||||||||||| |
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| T |
27542498 |
ttcaactagtttagttggacttatcttaatcaatgccatgttccgaaaagcttcaatctgcaaaccttgtccaaaaactttcattgtgtacattggattt |
27542597 |
T |
|
| Q |
104 |
tgatttcgacacgaatcaaaactaggtatagtttcaagatctccaacttcaaccatcttaacaattgcaattaacgatgcatcaacctgactaaattgtt |
203 |
Q |
| |
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|| ||||||||| ||||||||||||||| ||||| || |||||||||||||||| | || ||| | ||||| | |||||||||| ||| | |||||| |
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| T |
27542598 |
tggtttcgacacaaatcaaaactaggtaaagtttaaaattctccaacttcaaccaacctattaatctccattaatgttgcatcaacccgaccatattgtt |
27542697 |
T |
|
| Q |
204 |
tcaaatattcaatata--atcaagaatttcgtacctatg |
240 |
Q |
| |
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|||||| ||||||||| ||| ||||||||||||||||| |
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| T |
27542698 |
tcaaattttcaatatatcatcgagaatttcgtacctatg |
27542736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 41 - 240
Target Start/End: Complemental strand, 27543854 - 27543655
Alignment:
| Q |
41 |
atgtcccgagaagcttcaatcggaaaaccttggccaaaaacttcctttgttgacattggattttgatttcgacacgaatcaaaactaggtatagtttcaa |
140 |
Q |
| |
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|||||| |||||||||||||| | ||||| || |||||||||||| |||| ||||||||||||| ||||||||| ||||||||||||||| ||||| || |
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| T |
27543854 |
atgtcctgagaagcttcaatctgcaaaccatgtccaaaaacttccattgtgtacattggattttggtttcgacacaaatcaaaactaggtaaagtttgaa |
27543755 |
T |
|
| Q |
141 |
gatctccaacttcaaccatcttaacaattgcaattaacgatgcatcaacctgactaaattgtttcaaatattcaatataatcaagaatttcgtacctatg |
240 |
Q |
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| ||||||||| ||| || | ||||||| | ||||| | |||||||||| || ||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
27543754 |
gctctccaactccaagcaacctaacaatctccattaatgttgcatcaacccaaccaaattgtttcaaatattcaatatcatcgagaatttcgtacctatg |
27543655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 27581388 - 27581624
Alignment:
| Q |
1 |
taattcaactagtttagttggtcttatcttaatcaattccatgtcccgagaagcttcaatcggaaaaccttggccaaaaacttcctttgttgacattgga |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||| ||||||||| || ||||||||| |||||||| ||| |||||||| |||| |||||||| |
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| T |
27581388 |
taattcaactagtttagttggaattatcttaaccaatgccatgtcccacgaggcttcaatctataaaccttgtccagaaacttccattgtgtacattgga |
27581487 |
T |
|
| Q |
101 |
ttttgatttcgacacgaatcaaaactaggtatagtttcaagatctccaacttcaaccatcttaacaattgcaattaacgatgcatcaacctgactaaatt |
200 |
Q |
| |
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||||||||| ||| ||||||||||||||| ||||| ||| |||||||||||||||| | ||| ||| | ||||| | |||||||||| ||| ||||| |
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| T |
27581488 |
ttttgattttcaca--aatcaaaactaggtaaagtttgaagctctccaacttcaaccaacctaataatctccattaatgttgcatcaacccgaccaaatt |
27581585 |
T |
|
| Q |
201 |
gtttcaaatattcaatataatcaagaatttcgtacctat |
239 |
Q |
| |
|
|||||||||||||||||| || ||||||| |||||||| |
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| T |
27581586 |
gtttcaaatattcaatatcatggagaattttgtacctat |
27581624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 27583220 - 27582979
Alignment:
| Q |
1 |
taattcaactagtttagttggtcttatcttaatcaa--ttccatgtcccgagaagcttcaatcggaaaaccttggccaaaaacttcctttgttgacattg |
98 |
Q |
| |
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||||||| |||||||||||| | ||| |||||||| | ||||||| ||||||||||||||| |||||||| ||||||| |||| |||| |||||| |
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| T |
27583220 |
taattcatctagtttagttgaacatatattaatcaacatgccatgtctcgagaagcttcaatcaacaaaccttgtccaaaaatttccattgtgtacattg |
27583121 |
T |
|
| Q |
99 |
gattttgatttcgacacgaatcaaaactaggtatagtttcaagatctccaacttcaaccatcttaacaattgcaattaacgatgcatcaacctgactaaa |
198 |
Q |
| |
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||||||| ||||||||| ||| ||||||||||| ||||| ||| ||||||||| |||||| | ||||||| | ||| | | |||||||||| ||| ||| |
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| T |
27583120 |
gattttggtttcgacacaaattaaaactaggtaaagtttgaagctctccaactccaaccaacctaacaatctccattgatgttgcatcaacccgaccaaa |
27583021 |
T |
|
| Q |
199 |
ttgtttcaaatattcaatataatcaagaatttcgtacctatg |
240 |
Q |
| |
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|||||||||||||| ||||| ||| |||||||||||| |||| |
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| T |
27583020 |
ttgtttcaaatattaaatattatcgagaatttcgtacttatg |
27582979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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