View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10699_low_24 (Length: 248)

Name: NF10699_low_24
Description: NF10699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10699_low_24
NF10699_low_24
[»] chr4 (6 HSPs)
chr4 (148-236)||(18692374-18692461)
chr4 (148-235)||(18674294-18674389)
chr4 (179-236)||(5083212-5083269)
chr4 (179-229)||(18718903-18718953)
chr4 (182-236)||(18650691-18650745)
chr4 (179-228)||(18683098-18683147)
[»] scaffold0349 (1 HSPs)
scaffold0349 (150-236)||(17818-17903)
[»] chr6 (15 HSPs)
chr6 (150-236)||(27714041-27714126)
chr6 (150-241)||(27702274-27702364)
chr6 (150-236)||(26890190-26890275)
chr6 (150-234)||(26853746-26853829)
chr6 (187-241)||(31289436-31289490)
chr6 (150-226)||(26890566-26890641)
chr6 (153-234)||(26628139-26628219)
chr6 (153-234)||(26734116-26734196)
chr6 (190-236)||(26651235-26651281)
chr6 (190-236)||(26757203-26757249)
chr6 (180-224)||(26631597-26631641)
chr6 (180-224)||(26737572-26737616)
chr6 (179-224)||(27586671-27586716)
chr6 (179-236)||(27712634-27712691)
chr6 (200-236)||(26966229-26966265)
[»] chr8 (4 HSPs)
chr8 (150-234)||(29269934-29270017)
chr8 (89-142)||(26992284-26992337)
chr8 (46-113)||(35979965-35980032)
chr8 (26-113)||(44953023-44953109)
[»] chr3 (1 HSPs)
chr3 (27-103)||(23482671-23482747)
[»] chr7 (1 HSPs)
chr7 (67-112)||(45237102-45237147)
[»] chr2 (2 HSPs)
chr2 (25-132)||(35005789-35005895)
chr2 (29-113)||(43653563-43653647)


Alignment Details
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 18692374 - 18692461
Alignment:
Q  148 tctactaagattgaaattctcaaaactcttccaactgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggattct 236  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18692374 tctactaagattgaaattctcaaaactct-ccaactgaggtgcaaagcatatcaatactcactgccctttcgaacaaccaacggattct 18692461  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 235
Target Start/End: Original strand, 18674294 - 18674389
Alignment:
Q  148 tctactaagattgaaattctcaaaactcttccaactgagct---------gcaaagcatatcattactcactgccctttcgaacaaccaacggattc 235  Q
    ||||||||||||||||||||||||||||| |||||||||||         ||||||||||||| |||||||||||||||||| ||||||||||||||    
T  18674294 tctactaagattgaaattctcaaaactct-ccaactgagctaactgaggtgcaaagcatatcaatactcactgccctttcgatcaaccaacggattc 18674389  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 5083269 - 5083212
Alignment:
Q  179 caactgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggattct 236  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||    
T  5083269 caactgagctgcaaagcatatcattactcactgccctttcaaacaatccacggattct 5083212  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 18718903 - 18718953
Alignment:
Q  179 caactgagctgcaaagcatatcattactcactgccctttcgaacaaccaac 229  Q
    |||||||| |||||||||||||| |||||||||||| ||||||||||||||    
T  18718903 caactgaggtgcaaagcatatcaatactcactgcccgttcgaacaaccaac 18718953  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 18650691 - 18650745
Alignment:
Q  182 ctgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggattct 236  Q
    ||||| |||||||||||||| |||||||| ||| ||||||||||||| |||||||    
T  18650691 ctgaggtgcaaagcatatcaatactcacttcccgttcgaacaaccaatggattct 18650745  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 18683098 - 18683147
Alignment:
Q  179 caactgagctgcaaagcatatcattactcactgccctttcgaacaaccaa 228  Q
    |||||||| |||||||||||||| ||||||| ||||||| ||||||||||    
T  18683098 caactgaggtgcaaagcatatcaatactcacagcccttttgaacaaccaa 18683147  T

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Target: scaffold0349 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 17903 - 17818
Alignment:
Q  150 tactaagattgaaattctcaaaactcttccaactgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggattct 236  Q
    |||||||||||||||||||||| | || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17903 tactaagattgaaattctcaaagcact-ccaactgagctgcaaagcatatcattactcgctgccctttcgaacaaccaacggattct 17818  T

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Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 27714041 - 27714126
Alignment:
Q  150 tactaagattgaaattctcaaaactcttccaactgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggattct 236  Q
    |||||||||||||||||||||| | || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27714041 tactaagattgaaattctcaaagcact-ccaactgagctgcaaagcatatcattactcgctgccctttcgaacaaccaacggattct 27714126  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 150 - 241
Target Start/End: Original strand, 27702274 - 27702364
Alignment:
Q  150 tactaagattgaaattctcaaaactcttccaactgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggattctctgct 241  Q
    ||||||||| |||||||||||| | || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  27702274 tactaagatggaaattctcaaagcact-ccaactgagctgcaaagcatatcattactcactgtcctttcgaacaaccaacggattctgtgct 27702364  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 26890275 - 26890190
Alignment:
Q  150 tactaagattgaaattctcaaaactcttccaactgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggattct 236  Q
    ||||| |||||||||||||| |||||||| ||||||||||||||||||| | |||||||||||||||| |||||||| |||||||||    
T  26890275 tactacgattgaaattctcataactcttc-aactgagctgcaaagcataccgttactcactgccctttagaacaaccgacggattct 26890190  T

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Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 26853829 - 26853746
Alignment:
Q  150 tactaagattgaaattctcaaaactcttccaactgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggatt 234  Q
    |||||| |||||| ||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  26853829 tactaaaattgaatttctcaaaactctac-aactgggctgcaaagcatatcattactcactgccctttcgaacagccaacagatt 26853746  T

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Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 31289490 - 31289436
Alignment:
Q  187 ctgcaaagcatatcattactcactgccctttcgaacaaccaacggattctctgct 241  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  31289490 ctgcaaagcatagcattactcactgccctttcgaacaaccaacggattctgtgct 31289436  T

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Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 150 - 226
Target Start/End: Complemental strand, 26890641 - 26890566
Alignment:
Q  150 tactaagattgaaattctcaaaactcttccaactgagctgcaaagcatatcattactcactgccctttcgaacaacc 226  Q
    ||||| |||||||||||||| |||||||| || |||||||||||||||| | |||||||||||||||| ||||||||    
T  26890641 tactacgattgaaattctcataactcttcaaa-tgagctgcaaagcataccgttactcactgccctttagaacaacc 26890566  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 153 - 234
Target Start/End: Complemental strand, 26628219 - 26628139
Alignment:
Q  153 taagattgaaattctcaaaactcttccaactgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggatt 234  Q
    ||||||||||||||||||| | || ||||||||| || || ||||||||||||||||| ||| |||||||| ||||||||||    
T  26628219 taagattgaaattctcaaagcact-ccaactgagatgtaatgcatatcattactcacttcccattcgaacagccaacggatt 26628139  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 153 - 234
Target Start/End: Complemental strand, 26734196 - 26734116
Alignment:
Q  153 taagattgaaattctcaaaactcttccaactgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggatt 234  Q
    ||||||||||||||||||| | || ||||||||| || || ||||||||||||||||| ||| |||||||| ||||||||||    
T  26734196 taagattgaaattctcaaagcact-ccaactgagatgtaatgcatatcattactcacttcccattcgaacagccaacggatt 26734116  T

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Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 26651281 - 26651235
Alignment:
Q  190 caaagcatatcattactcactgccctttcgaacaaccaacggattct 236  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||    
T  26651281 caaagcatagcattactcactgccctttcgaacaaccaacagattct 26651235  T

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Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 26757249 - 26757203
Alignment:
Q  190 caaagcatatcattactcactgccctttcgaacaaccaacggattct 236  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||    
T  26757249 caaagcatagcattactcactgccctttcgaacaaccaacagattct 26757203  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 26631641 - 26631597
Alignment:
Q  180 aactgagctgcaaagcatatcattactcactgccctttcgaacaa 224  Q
    ||||||||||| ||||||| |||||||||||||||||| ||||||    
T  26631641 aactgagctgcgaagcatagcattactcactgccctttggaacaa 26631597  T

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Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 26737616 - 26737572
Alignment:
Q  180 aactgagctgcaaagcatatcattactcactgccctttcgaacaa 224  Q
    ||||||||||| ||||||| |||||||||||||||||| ||||||    
T  26737616 aactgagctgcgaagcatagcattactcactgccctttggaacaa 26737572  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 27586671 - 27586716
Alignment:
Q  179 caactgagctgcaaagcatatcattactcactgccctttcgaacaa 224  Q
    |||||||  |||||||||||||||||||||||||| |||| |||||    
T  27586671 caactgaattgcaaagcatatcattactcactgccatttcaaacaa 27586716  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 236
Target Start/End: Original strand, 27712634 - 27712691
Alignment:
Q  179 caactgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggattct 236  Q
    |||||||  ||||||||||||||||||||| |||| |||| ||||| | |||||||||    
T  27712634 caactgaattgcaaagcatatcattactcagtgccatttcaaacaagccacggattct 27712691  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 26966265 - 26966229
Alignment:
Q  200 cattactcactgccctttcgaacaaccaacggattct 236  Q
    ||||| || ||||||||||||||||||||||||||||    
T  26966265 cattattcgctgccctttcgaacaaccaacggattct 26966229  T

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Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 29269934 - 29270017
Alignment:
Q  150 tactaagattgaaattctcaaaactcttccaactgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggatt 234  Q
    ||||||||| ||||||| |||| | || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29269934 tactaagatggaaattcacaaagcact-ccaactgagctgcaaagcatatcattactcactgccctttcgaacaacaaacggatt 29270017  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 26992337 - 26992284
Alignment:
Q  89 aataaaatttaattttcaaattcactcattcatcaagaaaactaacgcatcttc 142  Q
    |||||||||||||||||||||||||  ||||||| ||||||||||||| |||||    
T  26992337 aataaaatttaattttcaaattcacatattcatccagaaaactaacgcctcttc 26992284  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 35980032 - 35979965
Alignment:
Q  46 tatgtatttacggttacatcctaaaataataaaacta-tcttcaaataaaatttaattttcaaattcac 113  Q
    |||||||||| |||||||||||||||| | |||| || |||| ||||||||||||||||||| ||||||    
T  35980032 tatgtatttatggttacatcctaaaatgacaaaattactctt-aaataaaatttaattttcatattcac 35979965  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 44953023 - 44953109
Alignment:
Q  26 gaatttttctaattacactttatgtatttacggttacatcctaaaataataaaactatcttcaaataaaatttaattttcaaattcac 113  Q
    ||||||||||||| ||||  |||||||| | ||||||| | |||||| || ||| |||||| |||| |||||||||||| ||||||||    
T  44953023 gaatttttctaatcacaccctatgtattcatggttacaccttaaaatgat-aaattatctttaaatgaaatttaatttttaaattcac 44953109  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 23482671 - 23482747
Alignment:
Q  27 aatttttctaattacactttatgtatttacggttacatcctaaaataataaaactatcttcaaataaaatttaattt 103  Q
    |||||||||||||||| || ||||||| | |||||||  ||||||| |||||| |||| | ||||||||||||||||    
T  23482671 aatttttctaattacatttcatgtattcatggttacacactaaaatgataaaattatccttaaataaaatttaattt 23482747  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 45237147 - 45237102
Alignment:
Q  67 taaaataataaaactatcttcaaataaaatttaattttcaaattca 112  Q
    |||||| |||||| |||||| |||||||||||||||||||||||||    
T  45237147 taaaatgataaaattatctttaaataaaatttaattttcaaattca 45237102  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 132
Target Start/End: Original strand, 35005789 - 35005895
Alignment:
Q  25 agaatttttctaattacactttatgtatttacggttacatcctaaaataataaaactatcttcaaataaaatttaattttcaaattcactcattcatcaa 124  Q
    ||||||| ||||||||||||  || |||||  | ||||| |||||||| | |||  || ||| ||||||||| |||||||||||||||| |||||| | |    
T  35005789 agaatttgtctaattacactc-atatatttctgattacaccctaaaatcacaaatttacctttaaataaaatataattttcaaattcacccattcaccca 35005887  T
Q  125 gaaaacta 132  Q
    ||||||||    
T  35005888 gaaaacta 35005895  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 43653647 - 43653563
Alignment:
Q  29 tttttctaattacactttatgtatttacggttacatcctaaaataataaaactatcttcaaataaaatttaattttcaaattcac 113  Q
    |||||||| |||||| |||| || ||   |||| |||||||||||| |||| |||||| ||||||||  | ||||||||||||||    
T  43653647 tttttctagttacaccttatttaatttttgttatatcctaaaataacaaaattatctttaaataaaaaattattttcaaattcac 43653563  T

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