View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10699_low_25 (Length: 248)

Name: NF10699_low_25
Description: NF10699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10699_low_25
NF10699_low_25
[»] chr3 (27 HSPs)
chr3 (19-236)||(19414796-19415013)
chr3 (19-231)||(18165773-18165985)
chr3 (19-236)||(18873049-18873266)
chr3 (19-236)||(18147442-18147659)
chr3 (19-231)||(19464970-19465182)
chr3 (19-236)||(19437570-19437787)
chr3 (19-236)||(19376234-19376451)
chr3 (19-168)||(17942634-17942783)
chr3 (19-236)||(19334621-19334838)
chr3 (19-168)||(19381573-19381722)
chr3 (19-231)||(25463667-25463879)
chr3 (19-160)||(14895561-14895702)
chr3 (19-167)||(19354396-19354544)
chr3 (19-235)||(19400339-19400555)
chr3 (30-236)||(19393761-19393967)
chr3 (19-236)||(18016634-18016851)
chr3 (19-168)||(18116645-18116794)
chr3 (19-235)||(17950445-17950661)
chr3 (63-235)||(18109052-18109224)
chr3 (19-167)||(19352073-19352221)
chr3 (30-157)||(16677901-16678028)
chr3 (19-161)||(17726708-17726850)
chr3 (19-161)||(19027937-19028079)
chr3 (45-133)||(19439359-19439447)
chr3 (19-168)||(19461867-19462018)
chr3 (19-157)||(18104037-18104175)
chr3 (66-168)||(19425367-19425469)
[»] chr4 (2 HSPs)
chr4 (19-236)||(15536145-15536362)
chr4 (19-157)||(2709759-2709897)
[»] scaffold0648 (1 HSPs)
scaffold0648 (19-231)||(3275-3487)
[»] scaffold0640 (1 HSPs)
scaffold0640 (19-231)||(6020-6232)
[»] scaffold0274 (2 HSPs)
scaffold0274 (19-231)||(2744-2956)
scaffold0274 (27-168)||(21304-21444)
[»] chr6 (1 HSPs)
chr6 (19-167)||(13666121-13666269)
[»] chr8 (1 HSPs)
chr8 (57-229)||(8460164-8460336)


Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 19415013 - 19414796
Alignment:
Q  19 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 118  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19415013 caaggtctaagtgaaacaaatcagagagattaaatagctgtggtggaatagtcccttcaaatcggttatctctcaatatgaccacttctaagttctgtga 19414914  T
Q  119 catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19414913 catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagcagtacaaaggaacttcaccagatagc 19414814  T
Q  219 ctattactccacaggttc 236  Q
    ||||||||||||||||||    
T  19414813 ctattactccacaggttc 19414796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 18165985 - 18165773
Alignment:
Q  19 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 118  Q
    ||||||||||||||||||||| ||||||||| |||| |||||| |||||||||||||||||| ||||| ||||||||||||| |||||||| || |||||    
T  18165985 caaggtctaagtgaaacaaattagagagattgaatatttgtggtggaatagtcccttcaaattggttagctctcaatatgaccacttctaacttttgtga 18165886  T
Q  119 catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc 218  Q
     ||||  ||||||||||||||| ||||||||||||||||||| ||||||| |   ||||| ||| || | ||||||| ||| | |||||||||| |||||    
T  18165885 aatcaaaattggtatggttccagaaaattcattttctcccaagttcatgatttccaattggttcaaatcggagaagtgcaatgaaacttcaccaaatagc 18165786  T
Q  219 ctattactccaca 231  Q
    |||||||||||||    
T  18165785 ctattactccaca 18165773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 18873049 - 18873266
Alignment:
Q  19 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 118  Q
    ||||||| ||||||||||||| ||||||||||||||||||||| | |||| ||||||||||| ||||| ||||||||||||||||||||| ||| |||||    
T  18873049 caaggtccaagtgaaacaaattagagagattaaatagttgtggtgaaatattcccttcaaattggttagctctcaatatgactacttctaggttttgtga 18873148  T
Q  119 catcatgattggtatggttccataaaattcattttctcccaaattcatgactct-taattgcttccaaccagagaagtacaaaggaacttcaccagatag 217  Q
    |||||||| ||||||| ||||| |||||||||||||||||||||||| || |||  || || |||||  |||||| ||      ||||||||||||||||    
T  18873149 catcatgaatggtatgtttccagaaaattcattttctcccaaattcaaga-tctgcaactgtttccattcagagaggtgatcttgaacttcaccagatag 18873247  T
Q  218 cctattactccacaggttc 236  Q
    |||||||||||||||||||    
T  18873248 cctattactccacaggttc 18873266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 18147659 - 18147442
Alignment:
Q  19 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 118  Q
    ||||||||||||||| ||||| |||||| || ||||||||| | ||||||||||||||||||   ||| ||||||||||||| |||  |||||| |||||    
T  18147659 caaggtctaagtgaatcaaataagagaggttgaatagttgttgtggaatagtcccttcaaatttattagctctcaatatgaccactagtaagttttgtga 18147560  T
Q  119 catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc 218  Q
    |||||||||||||||||||||| |||||||||||||||| || ||||||| |   ||||| |||||   |||||||||||| |||| ||| ||||| | |    
T  18147559 catcatgattggtatggttccagaaaattcattttctcctaagttcatgatttccaattgtttccagtaagagaagtacaatggaagttccccagacaac 18147460  T
Q  219 ctattactccacaggttc 236  Q
    ||||||||||||||||||    
T  18147459 ctattactccacaggttc 18147442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 19465182 - 19464970
Alignment:
Q  19 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 118  Q
    ||||||||||||||||||||  |  ||||| |||||||||||| |||||||||||||||||| ||||| ||||||||||||| ||||||||||  |||||    
T  19465182 caaggtctaagtgaaacaaaatatggagatcaaatagttgtggtggaatagtcccttcaaattggttagctctcaatatgaccacttctaagtcttgtga 19465083  T
Q  119 catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc 218  Q
     |||| ||| |||||||||||| ||||||||||||| ||||| ||||||  |   ||||| ||| ||  |||||||| ||| | ||||||||||||||||    
T  19465082 aatcaagataggtatggttccagaaaattcattttcgcccaagttcatgttttccaattggttcaaattagagaagtgcaacgaaacttcaccagatagc 19464983  T
Q  219 ctattactccaca 231  Q
    |||||||||||||    
T  19464982 ctattactccaca 19464970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 19437787 - 19437570
Alignment:
Q  19 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 118  Q
    ||||||||||||||| ||||| ||||||||| ||||||||| | ||||||||||||||||||   ||| ||||||||||||| |||| |||||| |||||    
T  19437787 caaggtctaagtgaatcaaataagagagattgaatagttgttgcggaatagtcccttcaaatttattagctctcaatatgaccacttttaagttttgtga 19437688  T
Q  119 catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc 218  Q
    |||||||||||||||||||||| |||||||||||||||| || ||||||  |   ||||| ||||    |||||||||||| |||| ||| || || | |    
T  19437687 catcatgattggtatggttccagaaaattcattttctcctaagttcatggtttccaattgtttccggttagagaagtacaatggaagttcccctgacaac 19437588  T
Q  219 ctattactccacaggttc 236  Q
    ||||||||||||||||||    
T  19437587 ctattactccacaggttc 19437570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 19376451 - 19376234
Alignment:
Q  19 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 118  Q
    ||||||||||||||||||||| ||||||||| ||||||||| | ||||||||||||||||||   ||| ||||||||||||| |  | |||||| |||||    
T  19376451 caaggtctaagtgaaacaaataagagagattgaatagttgttgtggaatagtcccttcaaatttattagctctcaatatgaccaaatataagttttgtga 19376352  T
Q  119 catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc 218  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||| || |   ||||| ||  || |||||| ||      |||||||||||||||||    
T  19376351 catcttgattggtatggttccagaaaattcattttctcccaaattcaagaattgcaattgatttgaagcagagaggtgagctagaacttcaccagatagc 19376252  T
Q  219 ctattactccacaggttc 236  Q
    ||||||||||| ||||||    
T  19376251 ctattactccataggttc 19376234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 17942783 - 17942634
Alignment:
Q  19 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 118  Q
    |||||||||||||||||||||  |||||||| ||||||||| | |||||||||||||||||| ||||| ||||||||||||| |||| |||||| |||||    
T  17942783 caaggtctaagtgaaacaaataggagagattgaatagttgttgcggaatagtcccttcaaattggttagctctcaatatgaccacttgtaagttttgtga 17942684  T
Q  119 catcatgattggtatggttccataaaattcattttctcccaaattcatga 168  Q
     |   ||||||||||||||||| |||| ||||||||||||||||||||||    
T  17942683 taagctgattggtatggttccaaaaaactcattttctcccaaattcatga 17942634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 19334838 - 19334621
Alignment:
Q  19 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 118  Q
    |||||||||||| || ||||| ||||||||| ||||||||| | |||||||||||||||||| | ||  ||||||||||||  | || |||||| |||||    
T  19334838 caaggtctaagtaaatcaaataagagagattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtga 19334739  T
Q  119 catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc 218  Q
    ||||    |||||||| ||||| |||||||||||||||||||||| |||||||| ||||| |||||| ||||||  | |    ||||||||||||| |||    
T  19334738 catccctgttggtatgcttccagaaaattcattttctcccaaatttatgactctcaattgtttccaatcagagagatgctcttgaacttcaccagacagc 19334639  T
Q  219 ctattactccacaggttc 236  Q
    ||||||||||| ||||||    
T  19334638 ctattactccataggttc 19334621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 19381722 - 19381573
Alignment:
Q  19 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 118  Q
    ||||||||||||||||||||| ||||||||| |||| |||||| |||||| ||||||||||| ||||| ||||||||||||| | ||||||||| | |||    
T  19381722 caaggtctaagtgaaacaaataagagagattgaataattgtggtggaatattcccttcaaattggttagctctcaatatgacaatttctaagttttctga 19381623  T
Q  119 catcatgattggtatggttccataaaattcattttctcccaaattcatga 168  Q
     |   | ||||||||||||||| |||||||||||||||||||||||||||    
T  19381622 taagttcattggtatggttccagaaaattcattttctcccaaattcatga 19381573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 25463879 - 25463667
Alignment:
Q  19 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 118  Q
    ||||||| || |||||||||| || |||||| ||||||||||| |||||| ||||||||||| ||||  ||||||||||||| ||||||||||   |||     
T  25463879 caaggtccaaatgaaacaaataagtgagattgaatagttgtggtggaatattcccttcaaattggtttgctctcaatatgaccacttctaagtatagtgg 25463780  T
Q  119 catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc 218  Q
    |||  | ||||||||||||||| ||||||||||||||||||| ||||||| |   |||||  ||||| |||||| ||  |   |||||||||||||||||    
T  25463779 catgttcattggtatggttccagaaaattcattttctcccaagttcatgatttccaattgtctccaatcagagaggtgtactagaacttcaccagatagc 25463680  T
Q  219 ctattactccaca 231  Q
    |||||| ||||||    
T  25463679 ctattattccaca 25463667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 14895561 - 14895702
Alignment:
Q  19 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 118  Q
    ||||||| || |||||||||  || |||||| |||| |||||| |||||| ||||||||||| |||||  ||||||||| || |||| |||||  |||||    
T  14895561 caaggtccaaatgaaacaaagaagtgagattgaataattgtggtggaatattcccttcaaattggttagatctcaatataaccacttgtaagtattgtga 14895660  T
Q  119 catcatgattggtatggttccataaaattcattttctcccaa 160  Q
    ||||||| ||||||| ||||||||||||||||||||||||||    
T  14895661 catcatggttggtatagttccataaaattcattttctcccaa 14895702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 19354544 - 19354396
Alignment:
Q  19 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 118  Q
    ||||||||||||||||||||| ||||||||||||||||||| | || ||| ||||||||||| ||||  ||||||||||||| |||  ||||   |||||    
T  19354544 caaggtctaagtgaaacaaattagagagattaaatagttgttgtgggatattcccttcaaattggttggctctcaatatgaccactgttaaggattgtga 19354445  T
Q  119 catcatgattggtatggttccataaaattcattttctcccaaattcatg 167  Q
    |||  ||||||||||||||||| ||||||| ||  ||||||| ||||||    
T  19354444 cattttgattggtatggttccagaaaattcgttagctcccaagttcatg 19354396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 19400555 - 19400339
Alignment:
Q  19 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 118  Q
    ||||||| || |||||||||| ||  ||||| |||| |||||  |||||||||||||||||| ||||| |||||| |||||| ||||||||||| |||||    
T  19400555 caaggtccaaatgaaacaaataagtaagattgaataattgtgttggaatagtcccttcaaattggttagctctcagtatgacaacttctaagttttgtga 19400456  T
Q  119 catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc 218  Q
     |   ||||||||||||||||  |||||||||||||||||||  ||| ||||   |||||  ||||| |||||| ||      || ||||||||||||||    
T  19400455 aaagttgattggtatggttcccgaaaattcattttctcccaagatcaagacttccaattgtctccaatcagagaggtgtcccagagcttcaccagatagc 19400356  T
Q  219 ctattactccacaggtt 235  Q
    ||||||| |||||||||    
T  19400355 ctattacgccacaggtt 19400339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 19393967 - 19393761
Alignment:
Q  30 tgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattg 129  Q
    ||||||| || ||||| ||| ||||||||| | |||||||| ||||||||| | ||  ||||||||||||| ||| ||||||| |||| ||||   | ||    
T  19393967 tgaaacatataagagatattgaatagttgttgtggaatagtaccttcaaattgattggctctcaatatgaccactactaagttttgtggcatcccaactg 19393868  T
Q  130 gtatggttccataaaattcattttctcccaaattcatgactct-taattgcttccaaccagagaagtacaaaggaacttcaccagatagcctattactcc 228  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||  |||||  ||||| |||||| ||  || |||||||||||||| ||| |||||||||    
T  19393867 gtatgtttccagaaaattcattttttcccaaattcatga-tctgcaattgtctccaatcagagaggtttaatggaacttcaccagacagcttattactcc 19393769  T
Q  229 acaggttc 236  Q
    | ||||||    
T  19393768 ataggttc 19393761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 18016851 - 18016634
Alignment:
Q  19 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 118  Q
    ||||||||||||||||||||| ||||||||| |||| |||| | |||||| |||||||||||   ||  ||||||||||||| |||  |||||| |||||    
T  18016851 caaggtctaagtgaaacaaataagagagattgaataattgtcgtggaataatcccttcaaatttattggctctcaatatgaccactcttaagttttgtga 18016752  T
Q  119 catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc 218  Q
    ||||   | ||||||| ||||| |||||||||||| |||||| |||||| |   |||||  |||||   ||||| ||| || |||| ||| ||||| |||    
T  18016751 catccctactggtatgtttccagaaaattcattttttcccaagttcatgtcctgtaattctttccagttagagatgtataatggaagttccccagacagc 18016652  T
Q  219 ctattactccacaggttc 236  Q
     ||||| |||||||||||    
T  18016651 ttattattccacaggttc 18016634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 18116794 - 18116645
Alignment:
Q  19 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 118  Q
    ||||||| || |||||||||| || |||||| |||| |||||  |||||| ||||||||||| ||||| |||||| ||||||||||||||| |  ||||     
T  18116794 caaggtccaaatgaaacaaattagtgagattgaataattgtgttggaatactcccttcaaattggttacctctcagtatgactacttctaaatattgtgg 18116695  T
Q  119 catcatgattggtatggttccataaaattcattttctcccaaattcatga 168  Q
     ||  | | ||||||||||||| ||||||||||||||||||| |||||||    
T  18116694 tatgttcaatggtatggttccagaaaattcattttctcccaagttcatga 18116645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 17950661 - 17950445
Alignment:
Q  19 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 118  Q
    ||||||| || |||||||| | ||  ||||| |||| |||||  |||||||| ||||| ||| ||||| ||||||||||||| |||||||| || |||||    
T  17950661 caaggtccaaatgaaacaagtaaggaagattgaataattgtgttggaatagttccttctaattggttagctctcaatatgacaacttctaatttttgtga 17950562  T
Q  119 catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc 218  Q
     |   |||||||||| ||| || ||||||||||||||||||| ||||||| |   |||||  ||||| |||||| ||      |||||||||||||||||    
T  17950561 taaattgattggtattgttgcagaaaattcattttctcccaagttcatgatttccaattgtctccaatcagagaggtgtcctagaacttcaccagatagc 17950462  T
Q  219 ctattactccacaggtt 235  Q
    ||||||||||| |||||    
T  17950461 ctattactccaaaggtt 17950445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 63 - 235
Target Start/End: Complemental strand, 18109224 - 18109052
Alignment:
Q  63 ggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaat 162  Q
    |||||||| ||||||||| ||||| ||||||||||||| |||||||| || ||||| |   |||||||||| ||| || ||||||||||||||||||| |    
T  18109224 ggaatagttccttcaaattggttagctctcaatatgacaacttctaatttttgtgataaattgattggtattgttgcagaaaattcattttctcccaagt 18109125  T
Q  163 tcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagcctattactccacaggtt 235  Q
    |||||| |   |||||  ||||| |||||| ||      |||||||||||||||||||||||||||| |||||    
T  18109124 tcatgatttccaattgtctccaatcagagaggtgtcctagaacttcaccagatagcctattactccaaaggtt 18109052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 19352221 - 19352073
Alignment:
Q  19 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 118  Q
    ||||||||||||||||||||| ||||||||| |||| |||| | |||||| |||||||||||   ||  |||| |||||||| ||| ||||||| |||||    
T  19352221 caaggtctaagtgaaacaaataagagagattgaataattgttgtggaataatcccttcaaatttattggctctaaatatgaccactactaagttttgtga 19352122  T
Q  119 catcatgattggtatggttccataaaattcattttctcccaaattcatg 167  Q
    ||||   |  |||||| ||||| ||||||||||||||||||| ||||||    
T  19352121 catccctaccggtatgtttccagaaaattcattttctcccaagttcatg 19352073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 157
Target Start/End: Complemental strand, 16678028 - 16677901
Alignment:
Q  30 tgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattg 129  Q
    |||||||||  ||||||||| ||||  ||| | |||||| | ||||||||  ||||| |||||||||| || ||||||||||| ||||||||| | ||||    
T  16678028 tgaaacaaagaagagagattgaataactgtagtggaatacttccttcaaaatggttagctctcaatataacaacttctaagttttgtgacatcttaattg 16677929  T
Q  130 gtatggttccataaaattcattttctcc 157  Q
    ||||||||||| ||||||||||||||||    
T  16677928 gtatggttccagaaaattcattttctcc 16677901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 17726708 - 17726850
Alignment:
Q  19 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 118  Q
    ||||||| ||||| ||||||  ||||||||| |||||||||| |||||||| |||||||||  | ||| ||| ||||||||| | ||||||||  |||||    
T  17726708 caaggtccaagtgcaacaaagaagagagattgaatagttgtgcaggaataggcccttcaaaatgattacctcccaatatgaccatttctaagtgttgtga 17726807  T
Q  119 catcatgattggtatggttccataaaattcattttctcccaaa 161  Q
    ||||   | ||||||| ||||| ||||||||||||||||||||    
T  17726808 catctctactggtatgtttccagaaaattcattttctcccaaa 17726850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 19027937 - 19028079
Alignment:
Q  19 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 118  Q
    ||||||| ||||| ||||||  ||||||||| |||||||||| |||||||| |||||||||  | ||| ||| ||||||||| | ||||||||  |||||    
T  19027937 caaggtccaagtgcaacaaagaagagagattgaatagttgtgcaggaataggcccttcaaaatgattacctcccaatatgaccatttctaagtgttgtga 19028036  T
Q  119 catcatgattggtatggttccataaaattcattttctcccaaa 161  Q
    ||||   | ||||||| ||||| ||||||||||||||||||||    
T  19028037 catctctactggtatgtttccagaaaattcattttctcccaaa 19028079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 19439447 - 19439359
Alignment:
Q  45 agattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtat 133  Q
    ||||| ||||||||| | |||||||| ||||||||| |||||||||||||||| || ||| ||||||| ||||||||||||||||||||    
T  19439447 agattgaatagttgttgtggaatagttccttcaaattggttatctctcaatattaccactcctaagttttgtgacatcatgattggtat 19439359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 19462018 - 19461867
Alignment:
Q  19 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctca--atatgactacttctaagttctgt 116  Q
    ||||||| || |||||||||| || |||||| |||| |||||  |||||| ||||||||||| ||||| ||||||  |||||| ||||||||| |  |||    
T  19462018 caaggtccaaatgaaacaaattagtgagattgaataattgtgttggaatactcccttcaaattggttacctctcagtatatgaatacttctaaatattgt 19461919  T
Q  117 gacatcatgattggtatggttccataaaattcattttctcccaaattcatga 168  Q
    |  ||  | | ||||||||||||| ||||||||||||||||||| |||||||    
T  19461918 ggtatgttcaatggtatggttccagaaaattcattttctcccaagttcatga 19461867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 18104175 - 18104037
Alignment:
Q  19 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 118  Q
    |||||||||||  || ||||| ||||||||| ||||||||| |  |||| |||||||||||| | ||  ||||||||||||  ||||||||||| |||||    
T  18104175 caaggtctaagaaaatcaaataagagagattgaatagttgttgcagaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtga 18104076  T
Q  119 catcatgattggtatggttccataaaattcattttctcc 157  Q
    |||    | |||||| |||||| ||||||||||||||||    
T  18104075 catacctactggtatagttccagaaaattcattttctcc 18104037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 168
Target Start/End: Complemental strand, 19425469 - 19425367
Alignment:
Q  66 atagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaattca 165  Q
    ||||||||||||||| ||||| ||||||||||||| |||||||| || ||||| |   | ||||||||| ||||  |||||| ||||||||||||| |||    
T  19425469 atagtcccttcaaattggttagctctcaatatgacgacttctaatttttgtgataagttcattggtatgattcctgaaaatttattttctcccaaaatca 19425370  T
Q  166 tga 168  Q
    |||    
T  19425369 tga 19425367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 15536362 - 15536145
Alignment:
Q  19 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 118  Q
    ||||||||||||||||||||| ||||||||| |||| |||||| |||||| |||||||||||   ||   |||||||||||| ||| ||||||| |||||    
T  15536362 caaggtctaagtgaaacaaataagagagattgaataattgtggcggaataatcccttcaaatttattggttctcaatatgaccactactaagttttgtga 15536263  T
Q  119 catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc 218  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||  |   ||||| ||| || |||||| || ||  |||||||||||||| |      
T  15536262 catcatgattggtatggttccagaaaattcattttctcccaagttcatggtttgcaattgtttcgaagcagagaggtgcattggaacttcaccagacaaa 15536163  T
Q  219 ctattactccacaggttc 236  Q
    |||||| |||||||||||    
T  15536162 ctattattccacaggttc 15536145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 2709759 - 2709897
Alignment:
Q  19 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 118  Q
    ||||||| |||||| |||| | ||||||||| |||| |||||  ||||||||||||| |||| ||||| ||||||||||||  ||||  || |  || ||    
T  2709759 caaggtccaagtgatacaacttagagagattgaataattgtgttggaatagtccctttaaattggttagctctcaatatgagaactttcaaatcttgcga 2709858  T
Q  119 catcatgattggtatggttccataaaattcattttctcc 157  Q
    |||| |||||||||| |||||| ||||||||||||||||    
T  2709859 catcttgattggtatagttccagaaaattcattttctcc 2709897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 3275 - 3487
Alignment:
Q  19 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 118  Q
    ||||||| ||||||||||||| ||||||||| |||| |||||  |||||||||||||| ||| ||||| |||| |||||||| |||||||| |  ||||     
T  3275 caaggtccaagtgaaacaaataagagagattgaataattgtgatggaatagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtgg 3374  T
Q  119 catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc 218  Q
    |||  ||||||||||||||||| |||| ||||||||| |||||||||||| |   ||||| |||||| |||||| ||      ||||||||||||| |||    
T  3375 catgttgattggtatggttccagaaaactcattttcttccaaattcatgaattgcaattgtttccaatcagagaggtgtcctagaacttcaccagacagc 3474  T
Q  219 ctattactccaca 231  Q
     ||||||||||||    
T  3475 ttattactccaca 3487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 6232 - 6020
Alignment:
Q  19 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 118  Q
    ||||||| ||||||||||||| ||||||||| |||| |||||  |||||||||||||| ||| ||||| |||| |||||||| |||||||| |  ||||     
T  6232 caaggtccaagtgaaacaaataagagagattgaataattgtgatggaatagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtgg 6133  T
Q  119 catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc 218  Q
    |||  ||||||||||||||||| |||| ||||||||| |||||||||||| |   ||||| |||||| |||||| ||      ||||||||||||| |||    
T  6132 catgttgattggtatggttccagaaaactcattttcttccaaattcatgaattgcaattgtttccaatcagagaggtgtcctagaacttcaccagacagc 6033  T
Q  219 ctattactccaca 231  Q
     ||||||||||||    
T  6032 ttattactccaca 6020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 2744 - 2956
Alignment:
Q  19 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 118  Q
    ||||||| ||||||||||||| ||||||||| |||| |||||  |||||||||||||| ||| ||||| |||| |||||||| |||||||| |  ||||     
T  2744 caaggtccaagtgaaacaaataagagagattgaataattgtgatggaatagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtgg 2843  T
Q  119 catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc 218  Q
    |||  ||||||||||||||||| |||| ||||||||| |||||||||||| |   ||||| |||||| |||||| ||      ||||||||||||| |||    
T  2844 catgttgattggtatggttccagaaaactcattttcttccaaattcatgaattgcaattgtttccaatcagagaggtgtcctagaacttcaccagacagc 2943  T
Q  219 ctattactccaca 231  Q
     ||||||||||||    
T  2944 ttattactccaca 2956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 27 - 168
Target Start/End: Complemental strand, 21444 - 21304
Alignment:
Q  27 aagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatga 126  Q
    ||||||||||||| ||||||||| |||| |||||| |||||||||| ||| ||| ||||| |||| |||||||| |||||||| |  |||| |||  |||    
T  21444 aagtgaaacaaataagagagattgaataattgtggtggaatagtcc-ttcgaattggttagctcttaatatgaccacttctaaatattgtggcatgttga 21346  T
Q  127 ttggtatggttccataaaattcattttctcccaaattcatga 168  Q
    |||||||||||||| |||| ||||||||||||||||||||||    
T  21345 ttggtatggttccagaaaactcattttctcccaaattcatga 21304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 13666121 - 13666269
Alignment:
Q  19 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 118  Q
    ||||||||| ||||||||||| ||||||||||||||||||||| |||||| | |||||||||   || |||||||||||||| ||||  |||||  ||||    
T  13666121 caaggtctaggtgaaacaaataagagagattaaatagttgtgggggaatactgccttcaaatttattttctctcaatatgaccacttgaaagtttggtga 13666220  T
Q  119 catcatgattggtatggttccataaaattcattttctcccaaattcatg 167  Q
     |||| ||||| ||||||||||| ||||||||||||||| || ||||||    
T  13666221 aatcaagattgttatggttccattaaattcattttctcctaagttcatg 13666269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 229
Target Start/End: Complemental strand, 8460336 - 8460164
Alignment:
Q  57 tgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctc 156  Q
    ||||| |||||| | ||||||||| ||||  ||||||||||||| |||||||| | | |||||||  | ||||| ||||||||| |||||| ||||||||    
T  8460336 tgtggtggaatattgccttcaaattggttggctctcaatatgaccacttctaaataccgtgacatgttcattggaatggttccagaaaattgattttctc 8460237  T
Q  157 ccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagcctattactcca 229  Q
    |||| || || | |   ||||| ||| || || ||| || ||  |||||||| ||||||||||||||||||||    
T  8460236 ccaagttaatcatttccaattgtttcaaatcaaagaggtccaccggaacttcgccagatagcctattactcca 8460164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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