View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10699_low_27 (Length: 242)

Name: NF10699_low_27
Description: NF10699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10699_low_27
NF10699_low_27
[»] chr4 (6 HSPs)
chr4 (141-223)||(4344363-4344445)
chr4 (127-223)||(4124221-4124318)
chr4 (35-112)||(4360722-4360801)
chr4 (166-221)||(4335087-4335142)
chr4 (155-223)||(4360808-4360876)
chr4 (169-216)||(4320908-4320955)
[»] chr6 (21 HSPs)
chr6 (154-223)||(5176469-5176538)
chr6 (154-223)||(5278296-5278365)
chr6 (155-221)||(5284673-5284739)
chr6 (155-219)||(5396681-5396745)
chr6 (159-222)||(5182210-5182273)
chr6 (155-212)||(5257627-5257684)
chr6 (165-225)||(5066974-5067034)
chr6 (165-224)||(5344602-5344661)
chr6 (165-223)||(5096449-5096507)
chr6 (165-223)||(5102896-5102954)
chr6 (165-223)||(5128699-5128757)
chr6 (165-223)||(5354896-5354954)
chr6 (172-223)||(5074190-5074241)
chr6 (165-216)||(5447328-5447379)
chr6 (165-219)||(5147182-5147236)
chr6 (165-223)||(5157910-5157968)
chr6 (165-223)||(5370312-5370370)
chr6 (169-223)||(5425655-5425709)
chr6 (165-223)||(5433776-5433834)
chr6 (166-223)||(5690441-5690498)
chr6 (165-221)||(5446898-5446954)
[»] chr7 (1 HSPs)
chr7 (159-223)||(36214111-36214175)
[»] chr3 (4 HSPs)
chr3 (165-221)||(47987136-47987192)
chr3 (165-221)||(47996423-47996479)
chr3 (165-221)||(48005710-48005766)
chr3 (165-221)||(48014995-48015051)
[»] scaffold0294 (1 HSPs)
scaffold0294 (167-225)||(9180-9238)
[»] chr5 (1 HSPs)
chr5 (165-223)||(8877350-8877408)
[»] chr8 (1 HSPs)
chr8 (185-213)||(31175608-31175636)


Alignment Details
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 141 - 223
Target Start/End: Original strand, 4344363 - 4344445
Alignment:
Q  141 tccgtaagtttacttaatatttccgttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattatctga 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4344363 tccgtaagtttacttaatatttccgttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattgtctga 4344445  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 223
Target Start/End: Complemental strand, 4124318 - 4124221
Alignment:
Q  127 ctttgtatgctttatccgtaagtttact-taatatttccgttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattatctga 223  Q
    |||| ||||||||||||| |||||  || ||||||||| |||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||    
T  4124318 ctttttatgctttatccgcaagttctctataatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctga 4124221  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 4360722 - 4360801
Alignment:
Q  35 tactaaactaacgcatattggtactaaaaacatgtctctgcgtccagataaatattttatcatcac--tcaaggttgcaa 112  Q
    |||||||||| || ||||||||| |||||||||||||||||||||||||||| ||||||| |||||  ||||||||||||    
T  4360722 tactaaactatcgtatattggtattaaaaacatgtctctgcgtccagataaacattttattatcactttcaaggttgcaa 4360801  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 4335087 - 4335142
Alignment:
Q  166 ttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattatct 221  Q
    ||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||    
T  4335087 ttcttgcagaggatggagcagttgaaaattctcaatcttagtcattctcattatct 4335142  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 4360808 - 4360876
Alignment:
Q  155 taatatttccgttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattatctga 223  Q
    ||||||||  ||| || ||| ||||||| |||||||||||||||||||| ||||||||||| |||||||    
T  4360808 taatatttatgttatttcaggggatggagcagctgaaaattctcaatcttagtcattctcaatatctga 4360876  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 4320955 - 4320908
Alignment:
Q  169 ttgcagaggatggatcagctgaaaattctcaatctcagtcattctcat 216  Q
    |||||||||||||| |||||||| ||||| ||||| ||||||||||||    
T  4320955 ttgcagaggatggagcagctgaagattctaaatcttagtcattctcat 4320908  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 5176469 - 5176538
Alignment:
Q  154 ttaatatttccgttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattatctga 223  Q
    |||||||||  ||||||||||||||||||  ||||||||||||| ||||| |||||||||||||||||||    
T  5176469 ttaatatttttgttcttgcagaggatggagaagctgaaaattcttaatcttagtcattctcattatctga 5176538  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 5278296 - 5278365
Alignment:
Q  154 ttaatatttccgttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattatctga 223  Q
    |||||||||  ||||||||||||||||||  ||||||||||||| ||||| |||||||||||||||||||    
T  5278296 ttaatatttttgttcttgcagaggatggagaagctgaaaattcttaatcttagtcattctcattatctga 5278365  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 5284739 - 5284673
Alignment:
Q  155 taatatttccgttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattatct 221  Q
    ||||||||  ||||||||||||||||||  ||||||||||||||||||| |||||||| ||||||||    
T  5284739 taatatttatgttcttgcagaggatggagaagctgaaaattctcaatcttagtcattcccattatct 5284673  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 5396681 - 5396745
Alignment:
Q  155 taatatttccgttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattat 219  Q
    ||||||||  ||||||||||||| ||||  ||||||||||||||||||| |||||||||||||||    
T  5396681 taatatttatgttcttgcagaggctggagaagctgaaaattctcaatcttagtcattctcattat 5396745  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 5182273 - 5182210
Alignment:
Q  159 atttccgttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattatctg 222  Q
    ||||| ||||||||||||| ||||  ||||||||||||||||||| ||||||||||||| ||||    
T  5182273 atttctgttcttgcagaggctggagaagctgaaaattctcaatcttagtcattctcattttctg 5182210  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 5257684 - 5257627
Alignment:
Q  155 taatatttccgttcttgcagaggatggatcagctgaaaattctcaatctcagtcattc 212  Q
    ||||||||  ||||||||||||||||||  ||||||||||||||||||| ||||||||    
T  5257684 taatatttatgttcttgcagaggatggagaagctgaaaattctcaatcttagtcattc 5257627  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 5067034 - 5066974
Alignment:
Q  165 gttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattatctgatg 225  Q
    ||||||||||||||||||  ||||||||||||| ||||| || |||||||||| |||||||    
T  5067034 gttcttgcagaggatggaaaagctgaaaattctaaatcttagccattctcattgtctgatg 5066974  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 5344602 - 5344661
Alignment:
Q  165 gttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattatctgat 224  Q
    |||||| |||| ||||||  ||||||||||||||||||| |||||||||||||| |||||    
T  5344602 gttcttacagatgatggagaagctgaaaattctcaatcttagtcattctcattacctgat 5344661  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 5096449 - 5096507
Alignment:
Q  165 gttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattatctga 223  Q
    ||||||||||||||||||  | ||||||||||| ||||| ||||||||||||| |||||    
T  5096449 gttcttgcagaggatggaaaaactgaaaattctaaatcttagtcattctcattgtctga 5096507  T

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Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 5102954 - 5102896
Alignment:
Q  165 gttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattatctga 223  Q
    ||||||||||||| ||||  ||||||||||||| ||||| ||||||||||||| |||||    
T  5102954 gttcttgcagaggttggaaaagctgaaaattctaaatcttagtcattctcattgtctga 5102896  T

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Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 5128757 - 5128699
Alignment:
Q  165 gttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattatctga 223  Q
    ||||||||||| ||||||  ||||||||||||||||||  ||||||||||||| |||||    
T  5128757 gttcttgcagatgatggagaagctgaaaattctcaatcatagtcattctcattgtctga 5128699  T

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Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 5354954 - 5354896
Alignment:
Q  165 gttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattatctga 223  Q
    |||||||||||| ||||| || ||||||||||||||||| |||||||| |||| |||||    
T  5354954 gttcttgcagagaatggagcatctgaaaattctcaatcttagtcattcacattgtctga 5354896  T

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Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 5074241 - 5074190
Alignment:
Q  172 cagaggatggatcagctgaaaattctcaatctcagtcattctcattatctga 223  Q
    |||||| ||||  |||||||||| |||||||| |||||||||||||||||||    
T  5074241 cagaggttggagaagctgaaaatactcaatcttagtcattctcattatctga 5074190  T

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Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 5447328 - 5447379
Alignment:
Q  165 gttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcat 216  Q
    ||||||||||||||||||  | ||||||| ||||||||| ||||||||||||    
T  5447328 gttcttgcagaggatggaaaatctgaaaaatctcaatcttagtcattctcat 5447379  T

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Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 219
Target Start/End: Complemental strand, 5147236 - 5147182
Alignment:
Q  165 gttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattat 219  Q
    ||||||||||||||||||  |||| ||||||||||| || ||||| |||||||||    
T  5147236 gttcttgcagaggatggagaagctaaaaattctcaagcttagtcactctcattat 5147182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 5157968 - 5157910
Alignment:
Q  165 gttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattatctga 223  Q
    ||||||||||| ||||||  |||| |||||||| ||||| ||||||||||||| |||||    
T  5157968 gttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctga 5157910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 5370312 - 5370370
Alignment:
Q  165 gttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattatctga 223  Q
    ||||||||||| ||||||  |||| |||||||| ||||| ||||||||||||| |||||    
T  5370312 gttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctga 5370370  T

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Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 5425655 - 5425709
Alignment:
Q  169 ttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattatctga 223  Q
    |||||| |||||||  ||||||||||||| ||||| ||||||||||||| |||||    
T  5425655 ttgcagtggatggaaaagctgaaaattctaaatcttagtcattctcattgtctga 5425709  T

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Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 5433776 - 5433834
Alignment:
Q  165 gttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattatctga 223  Q
    |||||||||||| |||||  ||||||||||||| || || ||||||| |||||||||||    
T  5433776 gttcttgcagagaatggagaagctgaaaattcttaaccttagtcattgtcattatctga 5433834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 5690498 - 5690441
Alignment:
Q  166 ttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattatctga 223  Q
    |||||| ||| ||||||  |||| |||||||||||||| ||||| |||||||||||||    
T  5690498 ttcttgtagatgatggagaagcttaaaattctcaatcttagtcactctcattatctga 5690441  T

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Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 5446898 - 5446954
Alignment:
Q  165 gttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattatct 221  Q
    ||||||||||||||||||  |||| |||||||||||||| || ||||| || |||||    
T  5446898 gttcttgcagaggatggagaagctaaaaattctcaatcttagccattcgcactatct 5446954  T

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Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 36214175 - 36214111
Alignment:
Q  159 atttccgttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattatctga 223  Q
    ||||| ||||||||||||| ||||  ||||||||||||||||||| |||||||||||||||||||    
T  36214175 atttctgttcttgcagaggctggaaaagctgaaaattctcaatcttagtcattctcattatctga 36214111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 47987192 - 47987136
Alignment:
Q  165 gttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattatct 221  Q
    ||||||||||| ||||||  |||| |||||||||||||| |||||||||||||||||    
T  47987192 gttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatct 47987136  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 47996479 - 47996423
Alignment:
Q  165 gttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattatct 221  Q
    ||||||||||| ||||||  |||| |||||||||||||| |||||||||||||||||    
T  47996479 gttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatct 47996423  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 48005766 - 48005710
Alignment:
Q  165 gttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattatct 221  Q
    ||||||||||| ||||||  |||| |||||||||||||| |||||||||||||||||    
T  48005766 gttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatct 48005710  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 48015051 - 48014995
Alignment:
Q  165 gttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattatct 221  Q
    ||||||||||| ||||||  |||| |||||||||||||| |||||||||||||||||    
T  48015051 gttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatct 48014995  T

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Target: scaffold0294 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 9238 - 9180
Alignment:
Q  167 tcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattatctgatg 225  Q
    ||||||||||| |||   ||||||||||||||||||| ||||||||||||||| |||||    
T  9238 tcttgcagaggctggcgaagctgaaaattctcaatcttagtcattctcattatttgatg 9180  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 8877350 - 8877408
Alignment:
Q  165 gttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattatctga 223  Q
    ||||||||||||||||||  |||| |||||||||||||| || || |||||| ||||||    
T  8877350 gttcttgcagaggatggagaagctaaaaattctcaatcttagccactctcatcatctga 8877408  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 31175608 - 31175636
Alignment:
Q  185 agctgaaaattctcaatctcagtcattct 213  Q
    |||||||||||||||||||||||||||||    
T  31175608 agctgaaaattctcaatctcagtcattct 31175636  T

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