View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10699_low_3 (Length: 441)
Name: NF10699_low_3
Description: NF10699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10699_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 175 - 430
Target Start/End: Complemental strand, 16990632 - 16990377
Alignment:
| Q |
175 |
gggaaggtaaaaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaa |
274 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16990632 |
gggaaggtataaaacctttccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaa |
16990533 |
T |
|
| Q |
275 |
tagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaaccaccttcaaagaaaca |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16990532 |
tagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaaccaccttcaaagaaaca |
16990433 |
T |
|
| Q |
375 |
ccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcat |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16990432 |
ccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcat |
16990377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 175 - 430
Target Start/End: Original strand, 37241968 - 37242223
Alignment:
| Q |
175 |
gggaaggtaaaaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaa |
274 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37241968 |
gggaaggtataaaaccttcctaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaa |
37242067 |
T |
|
| Q |
275 |
tagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaaccaccttcaaagaaaca |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37242068 |
tagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaaccaccttcaaagaaaca |
37242167 |
T |
|
| Q |
375 |
ccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcat |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37242168 |
ccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcat |
37242223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 153 - 430
Target Start/End: Original strand, 1258663 - 1258935
Alignment:
| Q |
153 |
gaggtggcatttcacatgggaagggaaggtaaaaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcat |
252 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1258663 |
gaggtggcatttcacatgggaagg-----tataaaaccttcccaccatggatcacacaagataaatggttagattatgcatttctattaaagcttatcat |
1258757 |
T |
|
| Q |
253 |
gttctcccacatctgatctcaatagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaacc |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1258758 |
gttctcccacatctgatctcaatagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctctaggctccatctcccacaacc |
1258857 |
T |
|
| Q |
353 |
agcaaccaccttcaaagaaacaccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcat |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1258858 |
agcaaccaccttcaaagaaacaccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcat |
1258935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 154 - 430
Target Start/End: Complemental strand, 34873736 - 34873478
Alignment:
| Q |
154 |
aggtggcatttcacatgggaagggaaggtaaaaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatg |
253 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34873736 |
aggtggcatttcacatgggaagg-----tataaaaccttcccaccatggatcacacaagata------------gtgcatttctattaaagcttatcatg |
34873654 |
T |
|
| Q |
254 |
ttctcccacatctgatctcaatagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaacca |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34873653 |
ttctcccacatctgatctcaatagcttcactttccaaacttttgtcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaacca |
34873554 |
T |
|
| Q |
354 |
gcaaccaccttcaaagaaacaccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcat |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34873553 |
gcaaccaccttcaaagaaacaccaccaataattgaaacct-tttaagtgggtgaaccaaagcatgacttaccttcat |
34873478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 13809952 - 13810019
Alignment:
| Q |
185 |
aaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcat |
252 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
13809952 |
aaaacttttccaccatgggtcacacaagataaatggttacattgtgcacttctattaaagcttatcat |
13810019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 175 - 430
Target Start/End: Complemental strand, 2320248 - 2319993
Alignment:
| Q |
175 |
gggaaggtaaaaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaa |
274 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2320248 |
gggaaggtataaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaa |
2320149 |
T |
|
| Q |
275 |
tagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaaccaccttcaaagaaaca |
374 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2320148 |
tagcttcactttccaaatttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaaccaccttcaaagaaaca |
2320049 |
T |
|
| Q |
375 |
ccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcat |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2320048 |
ccaccaataattgaaacctctttaagtgtgtgaaacaaagcatgacttaccttcat |
2319993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 194 - 311
Target Start/End: Complemental strand, 38544340 - 38544223
Alignment:
| Q |
194 |
ccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaatagcttcactttccaaact |
293 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||| || |||||||||| ||||||||| |||| |||| || || ||| | ||| | ||||||||| |
|
|
| T |
38544340 |
ccaccatgggaaacacaagatcaatggttagattgtacacttctattaaatcttatcatgctctctcacacctaattctaatggtttctcattccaaact |
38544241 |
T |
|
| Q |
294 |
tttctcatcttgctccca |
311 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
38544240 |
tttctcatcttcctccca |
38544223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 175 - 430
Target Start/End: Original strand, 31234131 - 31234386
Alignment:
| Q |
175 |
gggaaggtaaaaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaa |
274 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31234131 |
gggaaggtataaaaccttcccaccatggatcacacaagataaatgattagattgtacatttctattaaagcttatcatgttctcctacatctgatctcaa |
31234230 |
T |
|
| Q |
275 |
tagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaaccaccttcaaagaaaca |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31234231 |
tagcttcactttccaaacttttctcatcttgctcccagctttgtggtcgtctccctccaggctccatctcccacaaccagcaaccaccttcaaagaaaca |
31234330 |
T |
|
| Q |
375 |
ccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcat |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31234331 |
ccaccaataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcat |
31234386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 175 - 306
Target Start/End: Original strand, 18246192 - 18246323
Alignment:
| Q |
175 |
gggaaggtaaaaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaa |
274 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18246192 |
gggaaggtataaaactttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaa |
18246291 |
T |
|
| Q |
275 |
tagcttcactttccaaacttttctcatcttgc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
18246292 |
tagcttcactttccaaacttttctcatcttgc |
18246323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 191 - 302
Target Start/End: Complemental strand, 39087518 - 39087407
Alignment:
| Q |
191 |
ttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaatagcttcactttccaa |
290 |
Q |
| |
|
|||||||||| | ||||| || ||||||||||||||| ||||||||||| ||| ||||||||||||||||||| || |||| ||| ||||| |||||||| |
|
|
| T |
39087518 |
ttcccaccatagatcacataaaataaatggttagattttgcatttctataaaaccttatcatgttctcccacacctaatcttaattgcttctctttccaa |
39087419 |
T |
|
| Q |
291 |
acttttctcatc |
302 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39087418 |
acttttctcatc |
39087407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 41659682 - 41659739
Alignment:
| Q |
22 |
agttcctggatgctcatgtcttccatgttcctatggtcacttgaacccaacccaggtt |
79 |
Q |
| |
|
|||||||| |||||||||||||||| ||| ||||||||| |||||| ||||||||||| |
|
|
| T |
41659682 |
agttcctgaatgctcatgtcttccaagtttctatggtcatttgaacacaacccaggtt |
41659739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 41687659 - 41687598
Alignment:
| Q |
18 |
aaccagttcctggatgctcatgtcttccatgttcctatggtcacttgaacccaacccaggtt |
79 |
Q |
| |
|
||||||||| || |||||||||||||||| || ||||||||||| |||| ||||||||||| |
|
|
| T |
41687659 |
aaccagttcatgaatgctcatgtcttccaaatttctatggtcactcgaactcaacccaggtt |
41687598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 198 - 302
Target Start/End: Complemental strand, 20040276 - 20040174
Alignment:
| Q |
198 |
catgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaatagcttcactttccaaacttttc |
297 |
Q |
| |
|
||||| ||||| | ||||||||||||||||||||| |||||||||| ||||||||||||||||||| || |||| ||| |||| || |||||||||||| |
|
|
| T |
20040276 |
catggatcacataggataaatggttagattgtgcacttctattaaatcttatcatgttctcccacacctaatcttaatggctt--ctctccaaacttttc |
20040179 |
T |
|
| Q |
298 |
tcatc |
302 |
Q |
| |
|
||||| |
|
|
| T |
20040178 |
tcatc |
20040174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University