View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10699_low_32 (Length: 241)

Name: NF10699_low_32
Description: NF10699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10699_low_32
NF10699_low_32
[»] chr1 (2 HSPs)
chr1 (1-239)||(41327591-41327829)
chr1 (1-164)||(41337822-41337985)
[»] chr6 (6 HSPs)
chr6 (1-165)||(20916407-20916571)
chr6 (29-165)||(20916791-20916927)
chr6 (1-161)||(20926342-20926502)
chr6 (3-105)||(11609351-11609453)
chr6 (59-103)||(17395961-17396005)
chr6 (118-162)||(26903721-26903765)
[»] chr8 (2 HSPs)
chr8 (5-164)||(29383150-29383309)
chr8 (5-162)||(15994308-15994465)
[»] chr2 (2 HSPs)
chr2 (5-161)||(45009999-45010155)
chr2 (164-238)||(13747312-13747386)
[»] chr4 (3 HSPs)
chr4 (20-106)||(6612752-6612838)
chr4 (3-103)||(42329406-42329506)
chr4 (5-156)||(27015009-27015160)
[»] chr5 (1 HSPs)
chr5 (3-106)||(22790048-22790151)
[»] chr3 (4 HSPs)
chr3 (3-163)||(44491207-44491367)
chr3 (5-111)||(12530146-12530252)
chr3 (44-106)||(54565514-54565576)
chr3 (20-160)||(8562108-8562248)
[»] scaffold0381 (1 HSPs)
scaffold0381 (5-156)||(4623-4774)
[»] chr7 (1 HSPs)
chr7 (5-164)||(8866122-8866278)
[»] scaffold0252 (1 HSPs)
scaffold0252 (20-160)||(4011-4151)


Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 41327591 - 41327829
Alignment:
Q  1 cctaaaatacctagttctacacttcaatccggacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41327591 cctaaaatacctagttctacacttcaatccggacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggt 41327690  T
Q  101 tttgatgcttgcatttatgtagatcgcacctgcagaggcggggttcttgctttattttggcgcatgagcaatgctagccacagacgatttaacacttgcg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41327691 tttgatgcttgcatttatgtagatcgcacctgcagaggcggggttcttgctttattttggcgcatgagcaatgctagccacagacgatttaacacttgcg 41327790  T
Q  201 gttggacacaccctcttatagaatgccacgtgacctatg 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41327791 gttggacacaccctcttatagaatgccacgtgacctatg 41327829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 41337822 - 41337985
Alignment:
Q  1 cctaaaatacctagttctacacttcaatccggacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41337822 cctaaaatacctagttctacacttcaatccggacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggt 41337921  T
Q  101 tttgatgcttgcatttatgtagatcgcacctgcagaggcggggttcttgctttattttggcgca 164  Q
    ||||||||||||||||||| ||| | |||| ||| ||| | || |||| |||||||||||||||    
T  41337922 tttgatgcttgcatttatgcagaccacaccggcataggagagggtcttactttattttggcgca 41337985  T

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Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 20916407 - 20916571
Alignment:
Q  1 cctaaaatacctagttctacacttcaatccggacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggt 100  Q
    ||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20916407 cctaaaacacctagttctacccttcaacccggacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggt 20916506  T
Q  101 tttgatgcttgcatttatgtagatcgcacctgcagaggcggggttcttgctttattttggcgcat 165  Q
    |||||||||||||||||||||||||||||| | ||||| |||| |||||||||||||||||||||    
T  20916507 tttgatgcttgcatttatgtagatcgcaccggaagaggtgggggtcttgctttattttggcgcat 20916571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 29 - 165
Target Start/End: Original strand, 20916791 - 20916927
Alignment:
Q  29 ccggacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggttttgatgcttgcatttatgtagatcgca 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20916791 ccggacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggttttgatgcttgcatttatgtagatcgca 20916890  T
Q  129 cctgcagaggcggggttcttgctttattttggcgcat 165  Q
    || | ||||| |||| |||||||||||||||||||||    
T  20916891 ccggaagaggtgggggtcttgctttattttggcgcat 20916927  T

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Target: chr6; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 20926342 - 20926502
Alignment:
Q  1 cctaaaatacctagttctacacttcaatccggacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggt 100  Q
    |||||||||| ||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  20926342 cctaaaatacttagctcgacacttcaatccagacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagattgacgttatttgcttggt 20926441  T
Q  101 tttgatgcttgcatttatgtagatcgcacctgcagaggcggggttcttgctttattttggc 161  Q
    ||||||||||||||||||| ||| |  ||| ||||||| | || |||| ||||||||||||    
T  20926442 tttgatgcttgcatttatgcagaccaaaccggcagaggagagggtcttactttattttggc 20926502  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 11609453 - 11609351
Alignment:
Q  3 taaaatacctagttctacacttcaatccggacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggttt 102  Q
    |||| ||||||||||  || ||||||||||||||| | || ||||| |||| |||||||||||| || ||||||||||| ||| ||||  | ||||||||    
T  11609453 taaagtacctagttcggcaattcaatccggacctcttatttttaagagagacattagtccaccgtaaaaaaattgaagaattatgttatgttcttggttt 11609354  T
Q  103 tga 105  Q
    |||    
T  11609353 tga 11609351  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 17396005 - 17395961
Alignment:
Q  59 gtccaccgaaataaaattgaagatttacgttacttgcttggtttt 103  Q
    |||||||||||||||||||||| ||| ||| || |||||||||||    
T  17396005 gtccaccgaaataaaattgaagtttttcgtaacatgcttggtttt 17395961  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 26903721 - 26903765
Alignment:
Q  118 tgtagatcgcacctgcagaggcggggttcttgctttattttggcg 162  Q
    |||||| |||||| | |||||||||| ||||||||||||||||||    
T  26903721 tgtagaccgcaccgggagaggcgggggtcttgctttattttggcg 26903765  T

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Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 5 - 164
Target Start/End: Original strand, 29383150 - 29383309
Alignment:
Q  5 aaatacctagttctacacttcaatccggacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggttttg 104  Q
    |||||||| |||| | ||||||||  |||||| || || |||||||||| | |||||||||||||||||||||||||||||||||| ||||| |||||||    
T  29383150 aaatacctcgttcgatacttcaatatggacctactatttttaagtgagacactagtccaccgaaataaaattgaagatttacgttatttgctgggttttg 29383249  T
Q  105 atgcttgcatttatgtagatcgcacctgcagaggcggggttcttgctttattttggcgca 164  Q
    || ||||| ||||||| ||||||||| | || || || | |||||||||||| |||||||    
T  29383250 attcttgcttttatgttgatcgcaccggtagtggaggcggtcttgctttattgtggcgca 29383309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 162
Target Start/End: Complemental strand, 15994465 - 15994308
Alignment:
Q  5 aaatacctagttctacacttcaatccggacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggttttg 104  Q
    |||||||||||||  || ||||||||||||||  | || ||||||||||  ||||  ||||||||||||||||||||  | ||||   |||||||||  |    
T  15994465 aaatacctagttcggcatttcaatccggaccttttatttttaagtgagactttagctcaccgaaataaaattgaagaacttcgttttctgcttggttagg 15994366  T
Q  105 atgcttgcatttatgtagatcgcacctgcagaggcggggttcttgctttattttggcg 162  Q
    ||  |||  ||  |||||| |||||| | |||||||||| ||||||  ||||||||||    
T  15994365 attgttgttttcctgtagaccgcaccggtagaggcgggggtcttgcactattttggcg 15994308  T

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Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 5 - 161
Target Start/End: Original strand, 45009999 - 45010155
Alignment:
Q  5 aaatacctagttctacacttcaatccggacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggttttg 104  Q
    ||||||||| |||  ||||| ||||||||| ||||||||||||||||||  |||||||| ||||||||||||||||| |||  |||||| ||||||||||    
T  45009999 aaatacctaattcggcactttaatccggacatcctcttcttaagtgagactttagtccatcgaaataaaattgaagaattattttacttacttggttttg 45010098  T
Q  105 atgcttgcatttatgtagatcgcacctgcagaggcggggttcttgctttattttggc 161  Q
    || |||| || |  || || |||||  | ||||| |||| |||||| ||||||||||    
T  45010099 attcttgtatctcagttgaccgcactggaagaggtgggggtcttgccttattttggc 45010155  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 13747386 - 13747312
Alignment:
Q  164 atgagcaatgctagccacagacgatttaacacttgcggttggacacaccctcttatagaatgccacgtgacctat 238  Q
    |||||||||||||||  ||  || ||||||||||||| ||| |||||||| ||| ||| ||||||||| ||||||    
T  13747386 atgagcaatgctagctgcatgcgttttaacacttgcgattgaacacacccacttgtagcatgccacgttacctat 13747312  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 6612752 - 6612838
Alignment:
Q  20 cacttcaatccggacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggttttgat 106  Q
    ||||||||||||||| | |||||||||||||||| | ||||   ||||||||||||||||| |||||||||||||||||||||||||    
T  6612752 cacttcaatccggacgtactcttcttaagtgagacactagtatcccgaaataaaattgaagttttacgttacttgcttggttttgat 6612838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 42329406 - 42329506
Alignment:
Q  3 taaaatacctagttctacacttcaatccggacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggttt 102  Q
    |||| ||||||||||  |||||||||||||||||| | || |||||||||| |||||||||||| |||||||||||||| ||| ||||  | ||||||||    
T  42329406 taaagtacctagttcggcacttcaatccggacctcttatttttaagtgagacattagtccaccgtaataaaattgaagaattatgttatgttcttggttt 42329505  T
Q  103 t 103  Q
    |    
T  42329506 t 42329506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 156
Target Start/End: Complemental strand, 27015160 - 27015009
Alignment:
Q  5 aaatacctagttctacacttcaatccggacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggttttg 104  Q
    ||||| || |||| |||||||||||| ||| | ||||| |||||||||| ||| || | ||||||||||||||||| ||| || || ||||| |||||||    
T  27015160 aaatatctcgttcgacacttcaatccagacatactctttttaagtgagacattggttcgccgaaataaaattgaagtttttcgatatttgctcggttttg 27015061  T
Q  105 atgcttgcatttatgtagatcgcacctgcagaggcggggttcttgctttatt 156  Q
    || ||||  ||| ||| ||| |||||   ||| |||| | ||||||||||||    
T  27015060 attcttgtttttctgttgattgcaccaatagaagcggtggtcttgctttatt 27015009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 22790151 - 22790048
Alignment:
Q  3 taaaatacctagttctacacttcaatccggacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggttt 102  Q
    |||| ||||||||||  |||||||||||||  ||  | ||||||||||||| |||||||||||| ||||||||||||| ||||||| || ||||||||||    
T  22790151 taaagtacctagttcggcacttcaatccggttctattattcttaagtgagacattagtccaccgtaataaaattgaagctttacgtcacctgcttggttt 22790052  T
Q  103 tgat 106  Q
    ||||    
T  22790051 tgat 22790048  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 163
Target Start/End: Original strand, 44491207 - 44491367
Alignment:
Q  3 taaaatacctagttctacacttcaatccggacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggttt 102  Q
    |||| ||||||||||   ||||||||||||||||  | || |||| |||||   ||||||||||||||||||||||||| ||||||||||||||||| ||    
T  44491207 taaagtacctagttcggtacttcaatccggaccttttatttttaactgagacgctagtccaccgaaataaaattgaagaattacgttacttgcttggctt 44491306  T
Q  103 tgatgcttgcatttatgtagatcgcacctgcagaggcggggttcttgctttattttggcgc 163  Q
    ||||  |||| ||| | | ||||| |   | |||||||| |  ||||||||||||||||||    
T  44491307 tgatttttgcttttcttttgatcgaattggtagaggcggaggccttgctttattttggcgc 44491367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 12530252 - 12530146
Alignment:
Q  5 aaatacctagttctacacttcaatccggacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggttttg 104  Q
    ||||| || |||| |||||||||||| ||| | ||||| |||||| ||| ||| || ||||||||||||||||||| ||| || || ||||| |||||||    
T  12530252 aaatatctcgttcgacacttcaatccagacgtactctttttaagtcagacattggttcaccgaaataaaattgaagcttttcgatatttgctcggttttg 12530153  T
Q  105 atgcttg 111  Q
    || ||||    
T  12530152 attcttg 12530146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 54565576 - 54565514
Alignment:
Q  44 ttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggttttgat 106  Q
    |||||||||| ||||||||| || ||||||||||||| | |||||||| |||||| |||||||    
T  54565576 ttaagtgagacattagtccatcgtaataaaattgaagctctacgttacgtgcttgattttgat 54565514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 8562108 - 8562248
Alignment:
Q  20 cacttcaatccggacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggttttgatgcttgcatttatg 119  Q
    |||||||| ||||| || || |||||||||||||   |||  ||||| ||||||||||||||  | ||||  ||||||||||  ||||||||  || |||    
T  8562108 cacttcaacccggatcttcttttcttaagtgagactctagctcaccgtaataaaattgaagaacttcgttttttgcttggttacgatgcttgttttcatg 8562207  T
Q  120 tagatcgcacctgcagaggcggggttcttgctttattttgg 160  Q
    |||| |||||| | |||| ||||| | | ||||| ||||||    
T  8562208 tagaccgcaccgggagagccgggggtttagctttgttttgg 8562248  T

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Target: scaffold0381 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 156
Target Start/End: Original strand, 4623 - 4774
Alignment:
Q  5 aaatacctagttctacacttcaatccggacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggttttg 104  Q
    ||||| || |||| |||||||||||| ||| | ||||| |||||||||| ||| || | ||||||||||||||||| ||| || || ||||| |||||||    
T  4623 aaatatctcgttcgacacttcaatccagacatactctttttaagtgagacattggttcgccgaaataaaattgaagtttttcgatatttgctcggttttg 4722  T
Q  105 atgcttgcatttatgtagatcgcacctgcagaggcggggttcttgctttatt 156  Q
    || ||||  ||| ||| ||| |||||   ||| |||| | ||||||||||||    
T  4723 attcttgtttttctgttgattgcaccaatagaagcggtggtcttgctttatt 4774  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 164
Target Start/End: Complemental strand, 8866278 - 8866122
Alignment:
Q  5 aaatacctagttctacacttcaatccggacctcctcttcttaagtgagatattagtcc--accgaaataaaattgaagatttacgttacttgcttggttt 102  Q
    |||||||| ||||  |||||||||| |||||| || || |||||||||| | ||||||  |||| |||||||     || |||| ||| |||||||||||    
T  8866278 aaatacctggttcggcacttcaatcaggacctactatttttaagtgagacactagtccccaccgtaataaaa-----gaattacattatttgcttggttt 8866184  T
Q  103 tgatgcttgcatttatgtagatcgcacctgcagaggcggggttcttgctttattttggcgca 164  Q
    ||||  ||| |||| ||| || |||||| |||| || |||| |||||||||||| |||||||    
T  8866183 tgattgttgtatttctgttgaccgcaccggcagcggtgggggtcttgctttattctggcgca 8866122  T

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Target: scaffold0252 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 4011 - 4151
Alignment:
Q  20 cacttcaatccggacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggttttgatgcttgcatttatg 119  Q
    |||||||||||||| || || |||||||||||||   |||  ||||||||||||||||||||  | ||||  ||||||||||  ||||| ||  || |||    
T  4011 cacttcaatccggatcttcttttcttaagtgagactctagctcaccgaaataaaattgaagaacttcgttttttgcttggttacgatgcatgttttcatg 4110  T
Q  120 tagatcgcacctgcagaggcggggttcttgctttattttgg 160  Q
    |||| |||||| | |||| | ||| | | ||||||||||||    
T  4111 tagaccgcaccgggagagccaggggtttagctttattttgg 4151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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