View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10699_low_33 (Length: 241)

Name: NF10699_low_33
Description: NF10699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10699_low_33
NF10699_low_33
[»] chr1 (4 HSPs)
chr1 (1-98)||(47385438-47385535)
chr1 (17-98)||(47373410-47373491)
chr1 (176-223)||(47385313-47385360)
chr1 (176-223)||(47373566-47373613)
[»] chr3 (1 HSPs)
chr3 (183-223)||(20976480-20976520)


Alignment Details
Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 47385535 - 47385438
Alignment:
Q  1 tctgttgaggatgcacataggtggttgttgtggtttcttttttccatgtgttttgatatatattatttgaaagagcatcaaggaaattccaaccacca 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  47385535 tctgttgaggatgcacataggtggttgttgtggtttcttttttccatgtgttttgatatatattatttgaaagaccatcaaggaaattccaaccacca 47385438  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 47373410 - 47373491
Alignment:
Q  17 ataggtggttgttgtggtttcttttttccatgtgttttgatatatattatttgaaagagcatcaaggaaattccaaccacca 98  Q
    |||||||| ||||||||||||||||||  |||||||||||  ||||||||| |||||||| |||||||| ||||||||||||    
T  47373410 ataggtggctgttgtggtttctttttttgatgtgttttgagctatattattggaaagagcgtcaaggaagttccaaccacca 47373491  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 176 - 223
Target Start/End: Complemental strand, 47385360 - 47385313
Alignment:
Q  176 atcaaagaaacaagttttgaaggctaaatcaatggattgaggagtagg 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  47385360 atcaaagaaacaagttttgaaggctaaatcaatggattgaggagtagg 47385313  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 47373566 - 47373613
Alignment:
Q  176 atcaaagaaacaagttttgaaggctaaatcaatggattgaggagtagg 223  Q
    |||||| ||||||| |||||||||||||||||  ||||||||||||||    
T  47373566 atcaaacaaacaagatttgaaggctaaatcaacagattgaggagtagg 47373613  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 20976520 - 20976480
Alignment:
Q  183 aaacaagttttgaaggctaaatcaatggattgaggagtagg 223  Q
    ||||| |||||||||||||||||||||||||||| ||||||    
T  20976520 aaacatgttttgaaggctaaatcaatggattgagaagtagg 20976480  T

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