View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10699_low_34 (Length: 238)
Name: NF10699_low_34
Description: NF10699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10699_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 43611075 - 43611261
Alignment:
| Q |
16 |
gaaagcacgttggaaacgagtagcgatggtaactctgccattaagtttggnnnnnnntaattgatcagagcattactaagaaatggaaagatgaaaagaa |
115 |
Q |
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| T |
43611075 |
gaaagcacgttggaaacgagtagcgatggtaactctgccattaagtttggaaaaaaataattgatcagagcattactaagaaatggaaagatgaaaagaa |
43611174 |
T |
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| Q |
116 |
catggttgaatagactggttctcctctatttttcaaactaacactcgcaccctaatttgttggagaaattaccatcacctctccttg |
202 |
Q |
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| T |
43611175 |
catggttgaatagactggttctcctctatttttcaaactaacactcgcacccttatttgttggagaaattaccatcacctctccttg |
43611261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 43611249 - 43611282
Alignment:
| Q |
205 |
tcacctctccttgtgatataattttaattcgttt |
238 |
Q |
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| T |
43611249 |
tcacctctccttgtgatataattttaattcgttt |
43611282 |
T |
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