View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10699_low_39 (Length: 207)

Name: NF10699_low_39
Description: NF10699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10699_low_39
NF10699_low_39
[»] chr8 (2 HSPs)
chr8 (15-190)||(36939244-36939419)
chr8 (98-136)||(38789517-38789555)
[»] chr3 (1 HSPs)
chr3 (96-190)||(25583600-25583695)
[»] chr7 (1 HSPs)
chr7 (15-64)||(26406688-26406737)
[»] chr4 (1 HSPs)
chr4 (15-64)||(38370830-38370879)


Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 36939244 - 36939419
Alignment:
Q  15 aggaagaatcatattcacatcaagaatcgaaggaagaataagattatcaagaacaacccctttatcttagagnnnnnnnnncgaaatcattcacatcaaa 114  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||    
T  36939244 aggaagaatcagattcacatcaagaatcgaaggaagaataagattatcaagaacaacccctttatcttagagaaaaaaaaacgaaatcattcacatcaaa 36939343  T
Q  115 actgtcagattcggattcagttttatgtatttggattgttcttctacacctggattcaattcattcacatcaaaac 190  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36939344 actgtcagattcggattcaattttatgtatttggattgttcttctgcacctggattcaattcattcacatcaaaac 36939419  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 136
Target Start/End: Original strand, 38789517 - 38789555
Alignment:
Q  98 aaatcattcacatcaaaactgtcagattcggattcagtt 136  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  38789517 aaatcattcacatcaaaactgtcaaattctgattcagtt 38789555  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 96 - 190
Target Start/End: Original strand, 25583600 - 25583695
Alignment:
Q  96 cgaaatcattcacatcaaaactgtcagattcggattcagtt-ttatgtatttggattgttcttctacacctggattcaattcattcacatcaaaac 190  Q
    ||||||||||||||| || ||||||| |||||||||||||| || |  ||  || |||||||||| || | |||||||||||||||||||||||||    
T  25583600 cgaaatcattcacattaatactgtcaaattcggattcagttcttctacatcagggttgttcttctgcatccggattcaattcattcacatcaaaac 25583695  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 26406688 - 26406737
Alignment:
Q  15 aggaagaatcatattcacatcaagaatcgaaggaagaataagattatcaa 64  Q
    ||||||||| | ||||||||||||||||||| ||||||  ||||||||||    
T  26406688 aggaagaataaaattcacatcaagaatcgaaagaagaaggagattatcaa 26406737  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 38370830 - 38370879
Alignment:
Q  15 aggaagaatcatattcacatcaagaatcgaaggaagaataagattatcaa 64  Q
    ||||||||||| |||||||||||||||| || ||||||  ||||||||||    
T  38370830 aggaagaatcaaattcacatcaagaatcaaaagaagaaggagattatcaa 38370879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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