View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10699_low_45 (Length: 201)
Name: NF10699_low_45
Description: NF10699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10699_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 7e-88; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 263515 - 263344
Alignment:
| Q |
14 |
atgaagatggggtacatgaagattaggaagttgaacaagagatacagtgacccaatgataatattcctgatgttttccatagagacatgaagttcctaaa |
113 |
Q |
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| T |
263515 |
atgaagatggggtacatgaagattaggaagttgaacaagagatacagtgacccaatgataatattcatgatgttttccatagagacatgaagttcctaaa |
263416 |
T |
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| Q |
114 |
agaatcatgggtcaatatgacggaaaatgaagagattgaggtaaatggtaatgttggaaatattgaaacaag |
185 |
Q |
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| T |
263415 |
agaatcatgggtcaatatggcggaaaatgaagagattgaggtaaatggtaatgttggaaatattgaaacaag |
263344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 652406 - 652577
Alignment:
| Q |
14 |
atgaagatggggtacatgaagattaggaagttgaacaagagatacagtgacccaatgataatattcctgatgttttccatagagacatgaagttcctaaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
652406 |
atgaagatggggtacatgaagattaggaagttgaacaagagatacagtgacccaatgataatattcatgatgttttccatagagacatgaagttcctaaa |
652505 |
T |
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| Q |
114 |
agaatcatgggtcaatatgacggaaaatgaagagattgaggtaaatggtaatgttggaaatattgaaacaag |
185 |
Q |
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| T |
652506 |
agaatcatgggtcaatatggcggaaaatgaagagattgaggtaaatggtaatgttggaaatattgaaacaag |
652577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 838141 - 838312
Alignment:
| Q |
14 |
atgaagatggggtacatgaagattaggaagttgaacaagagatacagtgacccaatgataatattcctgatgttttccatagagacatgaagttcctaaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
838141 |
atgaagatggggtacatgaagattaggaagttgaacaagagatacagtgacccaatgataatattcatgatgttttccatagagacatgaagttcctaaa |
838240 |
T |
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| Q |
114 |
agaatcatgggtcaatatgacggaaaatgaagagattgaggtaaatggtaatgttggaaatattgaaacaag |
185 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
838241 |
agaatcatgggtcaatatggcggaaaatgaagagattgaggtaaatggtaatgttggaaatattgaaacaag |
838312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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