View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10699_low_6 (Length: 381)
Name: NF10699_low_6
Description: NF10699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10699_low_6 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 7 - 381
Target Start/End: Complemental strand, 43225770 - 43225396
Alignment:
| Q |
7 |
gtgtcttattcttatttgttgatatacaaattgtcagaatacaaattatatctatcttgttttagttatcactgagatcctgctaggctctaaggaaatt |
106 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43225770 |
gtgtcttattcttatttgttgatatacaaattgtcaggataaaaattatatctatcttgttttagttatcactgagatcctgctaggctctaaggaaatt |
43225671 |
T |
|
| Q |
107 |
tcggttatgcaggttatcactggacaagctgctgtgcatagatgcaatgcaacagtcaatttccttgaagaagagacgcctttcatccctccaacggtaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43225670 |
tcggttatgcaggttatcactggacaagctgctgtgcatagatgcaatgcaacagtcaatttccttgaagaagagacgcctttcatccctccaacggtaa |
43225571 |
T |
|
| Q |
207 |
acaatggtggcttgcatgactattttgaaagtgtagctgggaggttacttggtgttgataaaattaaagactggcagccgacggtgggatcagaagactt |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43225570 |
acaatggtggcttgcatgactattttgaaagtgtagctgggaggttacttggtgttgataaaattaaagaccagcagccgacggtgggatcagaagactt |
43225471 |
T |
|
| Q |
307 |
tgcattctatcaagaggctattcctggatacatcttcctcctcggaatggaggatgtctcagttgaacgtcttcc |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43225470 |
tgcattctatcaagaggctattcctggatacatcttcctcctcggaatggaggatgtctcagttgaacgtcttcc |
43225396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 79 - 381
Target Start/End: Original strand, 41652231 - 41652533
Alignment:
| Q |
79 |
tgagatcctgctaggctctaaggaaatttcggttatgcaggttatcactggacaagctgctgtgcatagatgcaatgcaacagtcaatttccttgaagaa |
178 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
41652231 |
tgagatcctgctaggctctaaggaaattttggttatgcaggttatcacgggacaagctgttgtgcatagatgcaacgcaacagtcaatttccttgaagaa |
41652330 |
T |
|
| Q |
179 |
gagacgcctttcatccctccaacggtaaacaatggtggcttgcatgactattttgaaagtgtagctgggaggttacttggtgttgataaaattaaagact |
278 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||| |||| ||| |
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| T |
41652331 |
gagaagcctttcatccctccaactataaacaatggtggcttgcatgaccattttcaaagtgtcgctgggaggttacttggtgttgataaagttaaggacc |
41652430 |
T |
|
| Q |
279 |
ggcagccgacggtgggatcagaagactttgcattctatcaagaggctattcctggatacatcttcctcctcggaatggaggatgtctcagttgaacgtct |
378 |
Q |
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|||||| | | |||||||||||||||| || |||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41652431 |
agcagccaatgttgggatcagaagacttcgccttctatcaagcggctttgcctggatacatcttcctcctcggaatggaggatgtctcagttgaacgtct |
41652530 |
T |
|
| Q |
379 |
tcc |
381 |
Q |
| |
|
||| |
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|
| T |
41652531 |
tcc |
41652533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 120 - 381
Target Start/End: Complemental strand, 43202940 - 43202679
Alignment:
| Q |
120 |
ttatcactggacaagctgctgtgcatagatgcaatgcaacagtcaatttccttgaagaagagacgcctttcatccctccaacggtaaacaatggtggctt |
219 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||| ||||||| |||||||||| |||||| |||||||||| |
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| T |
43202940 |
ttatcactggacaagctgctgtgcagagatgccatgcaacagtcagcttccttgaagaagagaagcctttcttccctccaactgtaaacgatggtggctt |
43202841 |
T |
|
| Q |
220 |
gcatgactattttgaaagtgtagctgggaggttacttggtgttgataaaattaaagactggcagccgacggtgggatcagaagactttgcattctatcaa |
319 |
Q |
| |
|
||||||||||||| ||||||| || ||||| || || |||| ||||||| |||||| | ||| || | | ||||||||||||||||||||||||||||| |
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| T |
43202840 |
gcatgactattttcaaagtgtcgccgggagtttgctcggtgctgataaagttaaaggcatgcaaccaatgatgggatcagaagactttgcattctatcaa |
43202741 |
T |
|
| Q |
320 |
gaggctattcctggatacatcttcctcctcggaatggaggatgtctcagttgaacgtcttcc |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43202740 |
gaggctattcctggatacatcttcctcctcggaatggaagatgtctcagttgaacgtcttcc |
43202679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 7 - 379
Target Start/End: Original strand, 41658287 - 41658659
Alignment:
| Q |
7 |
gtgtcttattcttatttgttgatatacaaattgtcagaatacaaattatatctatcttgttttagttatcactgagatcctgctaggctctaaggaaatt |
106 |
Q |
| |
|
|||||||||||||||||||| |||| | |||||| || ||||||||||||| |||| |||||||||| ||||||||||| || || | |||||| ||| |
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|
| T |
41658287 |
gtgtcttattcttatttgttaatattcgaattgttaggatacaaattatatttatcctgttttagttttcactgagatcttgttacgtgctaaggctatt |
41658386 |
T |
|
| Q |
107 |
tcggttatgcaggttatcactggacaagctgctgtgcatagatgcaatgcaacagtcaatttccttgaagaagagacgcctttcat-ccctccaacggta |
205 |
Q |
| |
|
| ||| || ||||||||| |||||||||||||||||| |||||||| |||||||| | |||||||| || ||| | |||| |||||| || || |
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|
| T |
41658387 |
ttggtcttgtaggttatcattggacaagctgctgtgcacagatgcaacgcaacagtgagcttccttgaggacaagatatc-gtcataccctcctactata |
41658485 |
T |
|
| Q |
206 |
aacaatggtggcttgcatgactattttgaaagtgtagctgggaggttacttggtgttgataaaattaaagactggcagccgacggtgggatcagaagact |
305 |
Q |
| |
|
||||||| | ||||||||||||||||| ||||||| |||||||| || || || ||||||||| |||| | | || | | ||||||||||||||| |
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|
| T |
41658486 |
aacaatgatagcttgcatgactattttcaaagtgttgctgggagtttgctcggcgttgataaagttaagggccatcatctattgatgggatcagaagact |
41658585 |
T |
|
| Q |
306 |
ttgcattctatcaagaggctattcctggatacatcttcctcctcggaatggaggatgtctcagttgaacgtctt |
379 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||| || |||||||||| |||||||| |||||||||||| |
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|
| T |
41658586 |
ttgcattctatcaagaggctatgcctggatacgtcttcatcgtcggaatggaagatgtctctgttgaacgtctt |
41658659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 7 - 379
Target Start/End: Complemental strand, 43211140 - 43210768
Alignment:
| Q |
7 |
gtgtcttattcttatttgttgatatacaaattgtcagaatacaaattatatctatcttgttttagttatcactgagatcctgctaggctctaaggaaatt |
106 |
Q |
| |
|
||||||||||||||||||||||||| | ||||| | ||||||||||||| |||| || ||||||| ||||| ||||| || || || |||||| || |
|
|
| T |
43211140 |
gtgtcttattcttatttgttgatattcggattgttacgatacaaattatatttatcctgctttagttttcactaagatcttgttacgcgctaaggttgtt |
43211041 |
T |
|
| Q |
107 |
tcggttatgcaggttatcactggacaagctgctgtgcatagatgcaatgcaacagtcaatttccttgaagaagagacgcctttcatccctccaacggtaa |
206 |
Q |
| |
|
| ||| || |||| |||| |||||||||||||||||| |||||||| |||||||| | |||||||| || ||| || | |||||||||| ||| |
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|
| T |
43211040 |
ttggtcttgtaggtgatcattggacaagctgctgtgcacagatgcaacgcaacagtgagcttccttgatgacaagataccgtctgtccctccaactataa |
43210941 |
T |
|
| Q |
207 |
acaatggtggcttgcatgactattttgaaagtgtagctgggaggttacttggtgttgataaaattaaagactggcagccgacggtgggatcagaagactt |
306 |
Q |
| |
|
|||||| | ||||||| ||||||||| ||||||| |||||||| || || || |||||||| |||||| | || | | |||||||||||||||| |
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|
| T |
43210940 |
acaatgatagcttgcacgactattttcaaagtgttgctgggagtttgctcggcattgataaagttaaaggccatcatctattgatgggatcagaagactt |
43210841 |
T |
|
| Q |
307 |
tgcattctatcaagaggctattcctggatacatcttcctcctcggaatggaggatgtctcagttgaacgtctt |
379 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||| || |||||||||| |||||||| |||||||||||| |
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|
| T |
43210840 |
tgcattctatcaagaggctatgcctggatacgtcttcatcgtcggaatggaagatgtctctgttgaacgtctt |
43210768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 291 - 380
Target Start/End: Original strand, 42918910 - 42918999
Alignment:
| Q |
291 |
tgggatcagaagactttgcattctatcaagaggctattcctggatacatcttcctcctcggaatggaggatgtctcagttgaacgtcttc |
380 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| | || ||||||| ||||||||||| |||||| ||||||| ||||||| ||||| |
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|
| T |
42918910 |
tgggatcataagacttttcattctatcaagaggctttaccgggatacagcttcctcctcgaaatggaagatgtctttgttgaacatcttc |
42918999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 291 - 380
Target Start/End: Complemental strand, 45289381 - 45289293
Alignment:
| Q |
291 |
tgggatcagaagactttgcattctatcaagaggctattcctggatacatcttcctcctcggaatggaggatgtctcagttgaacgtcttc |
380 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| | || ||||||| ||| ||||||| |||||| |||||||| |||||| ||||| |
|
|
| T |
45289381 |
tgggatcagaagacttttcattctatcaagaggctttaccgggatacagctt-ctcctcgaaatggaagatgtctctattgaacatcttc |
45289293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 5069596 - 5069543
Alignment:
| Q |
106 |
ttcggttatgcaggttatcactggacaagctgctgtgcatagatgcaatgcaac |
159 |
Q |
| |
|
|||| ||||||||||||||| ||| ||||||||||||||||| ||||||||||| |
|
|
| T |
5069596 |
ttcgtttatgcaggttatcattgggcaagctgctgtgcataggtgcaatgcaac |
5069543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 325
Target Start/End: Original strand, 19248910 - 19248944
Alignment:
| Q |
291 |
tgggatcagaagactttgcattctatcaagaggct |
325 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19248910 |
tgggatcagaagacttttcattctatcaagaggct |
19248944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 325
Target Start/End: Original strand, 19322094 - 19322128
Alignment:
| Q |
291 |
tgggatcagaagactttgcattctatcaagaggct |
325 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19322094 |
tgggatcagaagacttttcattctatcaagaggct |
19322128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 343
Target Start/End: Complemental strand, 5069408 - 5069356
Alignment:
| Q |
291 |
tgggatcagaagactttgcattctatcaagaggctattcctggatacatcttc |
343 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||| || ||||||||| ||||| |
|
|
| T |
5069408 |
tgggatccgaagacttttcattctatcaagaggtcatacctggatacttcttc |
5069356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 294 - 380
Target Start/End: Original strand, 34322112 - 34322198
Alignment:
| Q |
294 |
gatcagaagactttgcattctatcaagaggctattcctggatacatcttcctcctcggaatggaggatgtctcagttgaacgtcttc |
380 |
Q |
| |
|
||||| |||||||| |||||||| |||| ||| | || ||||||| |||||||||||||||||| ||| |||| ||||||| ||||| |
|
|
| T |
34322112 |
gatcataagacttttcattctataaagaagctttaccgggatacaacttcctcctcggaatggaagatatctctgttgaacatcttc |
34322198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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