View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10699_low_7 (Length: 369)
Name: NF10699_low_7
Description: NF10699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10699_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 356
Target Start/End: Original strand, 3809783 - 3810120
Alignment:
| Q |
19 |
tcaagtacacttaagccatatttaaaagaggaaaatatgattgctcgtttaaggttttgtttgtcaatgctcgaccgtaacagctcgcctcatgatccga |
118 |
Q |
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| T |
3809783 |
tcaagtacacttaagccatatttaaaagaggaaaatatgattgctcgtttaaggttttgtttgtcaatgctcgaccgtaacagctcgcctcatgatccga |
3809882 |
T |
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| Q |
119 |
agtttacttccatgcacaatactgtgtttatcgatgagaaatggttctatattacaaaaaataaaaccaattactatttgcattcggaagaggaggagcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3809883 |
agtttacttccatgcacaatactgtgtttatcgatgagaaatggttctatattacaaaaaataaaaccaattactatttgaattcggaagaggaggagcc |
3809982 |
T |
|
| Q |
219 |
acaccgagcatgtcaaagcaaaatttttattggtaagcttatgtttgtagctgcagtggccagacccaggtttgacaacgaaggaaaggagacattctca |
318 |
Q |
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||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3809983 |
acaccgaacatgtcaaagcaaaaattttattggtaagcttatgtttgtagctgcagtggccagacccaggtttgacaacgaaggaaaggagacattctca |
3810082 |
T |
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| Q |
319 |
gggaagattggtatatttccatttgtgtatgaacagcc |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
3810083 |
gggaagattggtatatttccatttgtgtatgaacagcc |
3810120 |
T |
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