View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10699_low_9 (Length: 319)

Name: NF10699_low_9
Description: NF10699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10699_low_9
NF10699_low_9
[»] chr3 (6 HSPs)
chr3 (117-305)||(39916374-39916563)
chr3 (217-301)||(33801029-33801113)
chr3 (217-303)||(39624635-39624721)
chr3 (217-301)||(39919010-39919094)
chr3 (239-301)||(26662908-26662970)
chr3 (17-63)||(39916281-39916327)
[»] chr5 (3 HSPs)
chr5 (216-303)||(26591313-26591400)
chr5 (216-303)||(26599435-26599522)
chr5 (217-301)||(12903194-12903278)
[»] chr7 (3 HSPs)
chr7 (217-303)||(23259702-23259788)
chr7 (217-301)||(39303966-39304050)
chr7 (218-286)||(23259935-23260003)
[»] chr1 (3 HSPs)
chr1 (217-303)||(10450661-10450747)
chr1 (216-301)||(7147393-7147478)
chr1 (216-304)||(31412165-31412252)
[»] scaffold0856 (1 HSPs)
scaffold0856 (216-301)||(2600-2685)
[»] chr8 (7 HSPs)
chr8 (217-301)||(9944205-9944289)
chr8 (216-301)||(37694997-37695082)
chr8 (216-301)||(37699520-37699605)
chr8 (216-301)||(37683114-37683199)
chr8 (217-301)||(34580866-34580949)
chr8 (217-301)||(39570784-39570867)
chr8 (223-301)||(34578125-34578202)


Alignment Details
Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 117 - 305
Target Start/End: Original strand, 39916374 - 39916563
Alignment:
Q  117 caagaagctgatcgtgaaatgttgttatgtcggcggaaattgcaaagcaaaggagttggagagaga--acaaaatacagcattaaaagtnnnnnnnntaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||        |||    
T  39916374 caagaagctgatcgtgaaatgttgttatgtcggcggaaattgcaaagcaaatgagttggagagagagaacaaaatacagcattaaaagtaaaataa-taa 39916472  T
Q  215 gatggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccctttg 305  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39916473 gttggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccctttg 39916563  T

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Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 217 - 301
Target Start/End: Original strand, 33801029 - 33801113
Alignment:
Q  217 tggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33801029 tggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 33801113  T

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Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 217 - 303
Target Start/End: Original strand, 39624635 - 39624721
Alignment:
Q  217 tggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccctt 303  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  39624635 tggggtgagagaggctcgaactctcgacctcaggattactcagcagctatgagacctacgcgctagccaactgcgccaccacccctt 39624721  T

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Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 217 - 301
Target Start/End: Original strand, 39919010 - 39919094
Alignment:
Q  217 tggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 301  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  39919010 tggggtgagagaggctcaaactctcgacctcaggattactcagaagctatgagacctacgcactggccaactgcgccaccacccc 39919094  T

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Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 239 - 301
Target Start/End: Complemental strand, 26662970 - 26662908
Alignment:
Q  239 ctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 301  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  26662970 ctcgacctcaggatcactcagtagctatgagacctacgcgctagccaactgcgccaccacccc 26662908  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 39916281 - 39916327
Alignment:
Q  17 aaaaatgatcacttatttatttattggtggcagatattttttgaaag 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  39916281 aaaaatgatcacttatttatttattggtggcagatattttttgaaag 39916327  T

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Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 216 - 303
Target Start/End: Complemental strand, 26591400 - 26591313
Alignment:
Q  216 atggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccctt 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26591400 atggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccctt 26591313  T

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Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 216 - 303
Target Start/End: Original strand, 26599435 - 26599522
Alignment:
Q  216 atggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccctt 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26599435 atggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccctt 26599522  T

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Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 217 - 301
Target Start/End: Complemental strand, 12903278 - 12903194
Alignment:
Q  217 tggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12903278 tggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 12903194  T

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Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 217 - 303
Target Start/End: Complemental strand, 23259788 - 23259702
Alignment:
Q  217 tggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccctt 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23259788 tggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccctt 23259702  T

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Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 217 - 301
Target Start/End: Complemental strand, 39304050 - 39303966
Alignment:
Q  217 tggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39304050 tggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 39303966  T

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Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 218 - 286
Target Start/End: Complemental strand, 23260003 - 23259935
Alignment:
Q  218 ggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaa 286  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23260003 ggggtgagagaggctcgaactctcgaccacaggattactcagaagctatgagacctacgcgctagccaa 23259935  T

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Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 217 - 303
Target Start/End: Complemental strand, 10450747 - 10450661
Alignment:
Q  217 tggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccctt 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10450747 tggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccctt 10450661  T

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Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 7147393 - 7147478
Alignment:
Q  216 atggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 301  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  7147393 atggggtgagagaggctcgaactctcgacctcaggatcactcagtagctatgagacctacgcgctagccaactgcgccaccacccc 7147478  T

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Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 216 - 304
Target Start/End: Original strand, 31412165 - 31412252
Alignment:
Q  216 atggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccaccccttt 304  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31412165 atggggtgagagaggctcaaactctcgacctcaggattact-agaagctatgagacctacgcgctagccaactgcgccaccaccccttt 31412252  T

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Target: scaffold0856 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 2600 - 2685
Alignment:
Q  216 atggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 301  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2600 atggggtgagagaggctcgaactctcgacctcaggataactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 2685  T

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Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 217 - 301
Target Start/End: Original strand, 9944205 - 9944289
Alignment:
Q  217 tggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 301  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9944205 tggggtgagagaggctcgaactctcgacctcaggatcactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 9944289  T

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Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 37695082 - 37694997
Alignment:
Q  216 atggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 301  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37695082 atggggtgagagaggctcgaactctcgacctcaggatcactcagaagctatgagacctacgcgctagccaactgcgccatcacccc 37694997  T

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Target: chr8; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 37699605 - 37699520
Alignment:
Q  216 atggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 301  Q
    |||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  37699605 atggggtgagagaggctcaaactctcgacctcaggatcactcagtagctatgagacctacgcgctagccaactgcgccaccacccc 37699520  T

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Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 37683199 - 37683114
Alignment:
Q  216 atggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 301  Q
    ||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||    
T  37683199 atggggtgagagaggcttgaactctcgacctcaggatcactcagtagctatgagacctacgcgctagccaactgcaccaccacccc 37683114  T

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Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 217 - 301
Target Start/End: Original strand, 34580866 - 34580949
Alignment:
Q  217 tggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 301  Q
    |||||||||||||||||||||||||||||||||||| ||||  | ||||||||||||||||||||||||||||||||||||||||    
T  34580866 tggggtgagagaggctcgaactctcgacctcaggataactctta-gctatgagacctacgcgctagccaactgcgccaccacccc 34580949  T

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Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 217 - 301
Target Start/End: Complemental strand, 39570867 - 39570784
Alignment:
Q  217 tggggtgagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 301  Q
    |||||||||||||||||||||||||||||||||||| ||||  | ||||||||||||||||||||||||||||||||||||||||    
T  39570867 tggggtgagagaggctcgaactctcgacctcaggataactctta-gctatgagacctacgcgctagccaactgcgccaccacccc 39570784  T

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Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 223 - 301
Target Start/End: Original strand, 34578125 - 34578202
Alignment:
Q  223 gagagaggctcgaactctcgacctcaggattactcagaagctatgagacctacgcgctagccaactgcgccaccacccc 301  Q
    |||||||||||||||||||||||||||||| ||||  | |||||||||||||| | |||||||||||||||||||||||    
T  34578125 gagagaggctcgaactctcgacctcaggataactctta-gctatgagacctacacactagccaactgcgccaccacccc 34578202  T

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