View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1069_high_17 (Length: 336)
Name: NF1069_high_17
Description: NF1069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1069_high_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 29 - 323
Target Start/End: Original strand, 1833286 - 1833581
Alignment:
| Q |
29 |
ataaaataaataaaaattgaatgaacatgatatttttgttgtattaaaaagttgaaagtatatttgtaccnnnnnnnntaaaa-ttgaaagtatacttgt |
127 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||| |
|
|
| T |
1833286 |
ataaaataaataaaaattgaatgagcatgatatttttgttgtattaaaaagttgaaagtatatttgtaacacaaaaaaaaaaaattgaaagtatacttgt |
1833385 |
T |
|
| Q |
128 |
ggttcaccaatccatctcattggggctgaagagaggccaacctcttgttcatgtgaacttgtgtgccacagatcactaaggagcaggttgaactcaccat |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1833386 |
ggttcaccaatccatctcattggggctgaagagaggccaacctcttgttcatgtgaacttgtgtgccacagatcactaaggagcaggttgaactcaccat |
1833485 |
T |
|
| Q |
228 |
cataatgaaatggctcgctttggttctttggtaaatctattatcaaagaaccatacaaccctgctgctctctgcatacctagtgtccatgatagaa |
323 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
1833486 |
cataatcaaatggctcgctttggttctttggtaaatctattatcaaagaaccatacaacccaggtgctctctgcatacctagtgtccatgatagaa |
1833581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 8e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 112 - 323
Target Start/End: Complemental strand, 35523518 - 35523306
Alignment:
| Q |
112 |
ttgaaagtatacttgtggttcaccaatccatctcattggggctgaagagaggccaacctcttgttcatgtgaacttgtgtgccacagatcactaaggagc |
211 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35523518 |
ttgaaaatatacctgtggttcaccaatccatctcattggggcagaagagaggccaacctcttgttcatgtgaacttgtgtgccacagatcactaaggagc |
35523419 |
T |
|
| Q |
212 |
aggttgaactcaccatcataatgaaatggctcgctttggttctttggtaaatctattatcaaagaaccatacaaccctgctgctctctgcatacc-tagt |
310 |
Q |
| |
|
|| |||||||||||||| |||||||||||||| |||||||||||||||||||| | ||| | |||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
35523418 |
agtttgaactcaccatcttaatgaaatggctctctttggttctttggtaaatccactattagagaaccatacaaccctgctgctctttgcataccatagt |
35523319 |
T |
|
| Q |
311 |
gtccatgatagaa |
323 |
Q |
| |
|
||||||||||||| |
|
|
| T |
35523318 |
gtccatgatagaa |
35523306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 119 - 323
Target Start/End: Complemental strand, 35506115 - 35505910
Alignment:
| Q |
119 |
tatacttgtggttcaccaatccatctcattggggctgaagagaggccaacctcttgttcatgtgaacttgtgtgccacagatcactaaggagcaggttga |
218 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35506115 |
tatacctgtggttcaccaatccatctcattggggcagaagagaggccaacctcttgttcatgtgaacttgtgtgccacagatcactaaggagcagattga |
35506016 |
T |
|
| Q |
219 |
actcaccatcataatgaaatggctcgctttggttctttggtaaatctattatcaaagaaccatacaaccctgctgctctctgcatacc-tagtgtccatg |
317 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||| | ||| | |||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
35506015 |
actcaccatcttaatgaaatggctctctttggttctttggtaaatccactattagagaaccatacaaccctgctgctctttgcataccatagtgtccatg |
35505916 |
T |
|
| Q |
318 |
atagaa |
323 |
Q |
| |
|
|||||| |
|
|
| T |
35505915 |
atagaa |
35505910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 119 - 323
Target Start/End: Complemental strand, 35535933 - 35535728
Alignment:
| Q |
119 |
tatacttgtggttcaccaatccatctcattggggctgaagagaggccaacctcttgttcatgtgaacttgtgtgccacagatcactaaggagcaggttga |
218 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35535933 |
tatacctgtggttcaccaatccatctcattggggcagaagagaggccaacctcttgttcatgtgaacttgtgtgccacagatcactaaggagcagattga |
35535834 |
T |
|
| Q |
219 |
actcaccatcataatgaaatggctcgctttggttctttggtaaatctattatcaaagaaccatacaaccctgctgctctctgcatacc-tagtgtccatg |
317 |
Q |
| |
|
|||||||||| |||||||||||||| |||||| ||||||||||||| | ||| | |||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
35535833 |
actcaccatcgtaatgaaatggctctctttggctctttggtaaatccactattagagaaccatacaaccctgctgctctttgcataccatagtgtccatg |
35535734 |
T |
|
| Q |
318 |
atagaa |
323 |
Q |
| |
|
|||||| |
|
|
| T |
35535733 |
atagaa |
35535728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University