View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1069_high_2 (Length: 779)

Name: NF1069_high_2
Description: NF1069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1069_high_2
NF1069_high_2
[»] chr7 (1 HSPs)
chr7 (12-748)||(25131234-25131962)


Alignment Details
Target: chr7 (Bit Score: 609; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 12 - 748
Target Start/End: Complemental strand, 25131962 - 25131234
Alignment:
Q  12 acagaagggaaggggaatggaagtgaagccaataaagttccaaaatacctgtcagtttatacagccactgaagccaaacaaagaggaatggaagtgaaaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25131962 acagaagggaaggggaatggaagtgaagccaataaagttccaaaagacctgtcagtttatacagccactgaagccaaacaaagaggaatggaagtgaaaa 25131863  T
Q  112 agaaactttaaatgaaatattttctgcaggacgtaatattttagcaagcaatatctaaagaaattttaaaatcatgaaacctaccgtaggattaacatgc 211  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25131862 agaaacttcaaatgaaatattttctgcaggacgtaatattttagcaaacaatatctaaagaaattttaaaatcatgaaacctaccataggattaacatgc 25131763  T
Q  212 tatagaaaaagcatttacgaaagaacatattccactccaaagaagatcaaagagagttcttaattctatcagtaaacattatacttagtcacacaaatct 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  25131762 tatagaaaaagcatttacgaaagaacatattccactccaaagaagatcaaagagagttcttaattctatcagtaaacattatacttagtcacgcaaatct 25131663  T
Q  312 catcctcttnnnnnnnnttagtctgattgaagaaacttattaaataata----agacataaagaaattgaaaggcatcattattattctaccagattcgt 407  Q
    |||||||||        ||||| ||||||||||||||||||||||||||    ||||||||||||||||           ||||||||||||||||||||    
T  25131662 catcctcttaaaaaaa-ttagtttgattgaagaaacttattaaataataggtaagacataaagaaattg-----------tattattctaccagattcgt 25131575  T
Q  408 gttttaattcagttgtggattgtgcagttctcgattttgttattttcaaatatgatctagaagttcgctgcccaattcagaaaatttgtgaattattgtg 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  25131574 gttttaattcagttgtggattgtgcagttctcgattttgttattttcaaatatgatctagaagttcgctacccaattcagaaaatttgtgaattattgtg 25131475  T
Q  508 ggtgatagtttatcagcccaagcttcagatttcattcttatagttctgttttaaattgccttatatcaaacatgattttagaaagtaaaaacaagaaaga 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25131474 ggtgatagtttatcagcccaagcttcagatttcattcttatagttctgttttatattgccttatatcaaacatgattttagaaagtaaaaacaagaaaga 25131375  T
Q  608 aaaagagccgtttggtaacttttgaatcaaaattgaaggtttgactagactgataaaaagtagctctgccattagattgaaaacttacactaagctacac 707  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  25131374 aaaagagccgtttggtaacttttgaatcaaaattgaaggtttgactagactgctaaaaagtagctctgccattagattgaaaacttacacttagctacac 25131275  T
Q  708 accaaacttgtttatagactaaaaacatataagatgaatca 748  Q
    | |||||||||| ||||||||||||||||||||||||||||    
T  25131274 atcaaacttgttcatagactaaaaacatataagatgaatca 25131234  T

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