View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1069_high_7 (Length: 591)

Name: NF1069_high_7
Description: NF1069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1069_high_7
NF1069_high_7
[»] chr1 (3 HSPs)
chr1 (1-317)||(28610356-28610672)
chr1 (410-496)||(28610182-28610268)
chr1 (118-279)||(28610622-28610783)
[»] chr5 (2 HSPs)
chr5 (82-309)||(14677042-14677269)
chr5 (2-81)||(14677042-14677121)
[»] chr8 (7 HSPs)
chr8 (82-309)||(36459859-36460086)
chr8 (59-310)||(33774971-33775222)
chr8 (77-171)||(35000134-35000228)
chr8 (177-252)||(33772995-33773070)
chr8 (71-182)||(33774871-33774982)
chr8 (8-81)||(36459859-36459932)
chr8 (68-228)||(35000581-35000741)
[»] chr7 (2 HSPs)
chr7 (53-252)||(47989907-47990106)
chr7 (47-252)||(47989679-47989884)
[»] chr4 (13 HSPs)
chr4 (53-171)||(35109745-35109863)
chr4 (53-171)||(35109973-35110091)
chr4 (53-171)||(35110201-35110319)
chr4 (53-171)||(35110429-35110547)
chr4 (53-171)||(35110657-35110775)
chr4 (209-310)||(31288115-31288216)
chr4 (68-171)||(36294465-36294568)
chr4 (47-171)||(35109511-35109635)
chr4 (194-309)||(31260593-31260708)
chr4 (68-219)||(36293961-36294112)
chr4 (47-249)||(36294615-36294817)
chr4 (116-216)||(36294192-36294292)
chr4 (53-228)||(35110885-35111060)
[»] chr6 (3 HSPs)
chr6 (65-225)||(24039168-24039328)
chr6 (59-171)||(24039450-24039562)
chr6 (83-150)||(24039926-24039993)
[»] chr3 (1 HSPs)
chr3 (206-309)||(42075576-42075679)
[»] scaffold0971 (1 HSPs)
scaffold0971 (206-250)||(3-47)


Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 28610672 - 28610356
Alignment:
Q  1 cttcacgttgtcgattgtgtcagaagatgcaacgtccagggttatggttttccctgttagggttttgacaaagatttgcatgccaccacggagacggaga 100  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28610672 cttcacgttgtcgattgtgtcagaagattcaacttccagggttatggttttccctgttagggttttgacaaagatttgcatgccaccacggagacggaga 28610573  T
Q  101 acaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctaccgtcttctagctgttttccggcgaagatgagacgttgttggtcaggtg 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28610572 acaaggtgaagcgtggactctttctggatattgtaatccgcaagagttctaccgtcttctagctgttttccggcgaagatgagacgttgttggtcaggtg 28610473  T
Q  201 gaattccttctttgtcttggattttggctttgacgttgtcgattgtgtcggatgattctacctctagggttattgttttgccggtcaaggttttcacgaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28610472 gaattccttctttgtcttggattttggctttgacgttgtcgattgtgtcggatgattctacctctagggttattgttttgccggtcaaggttttcacgaa 28610373  T
Q  301 aatctgcatgatgatat 317  Q
    |||||||||||||||||    
T  28610372 aatctgcatgatgatat 28610356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 410 - 496
Target Start/End: Complemental strand, 28610268 - 28610182
Alignment:
Q  410 gttgttgatttataaggagatgaaagaagaatccagaacactgaagcgtggaggttaagaaaggaattttgtttcgagaatggtcta 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28610268 gttgttgatttataaggagatgaaagaagaatccagaacactgaagcgtggagattaagaaaggaattttgtttcgagaatggtcta 28610182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 118 - 279
Target Start/End: Complemental strand, 28610783 - 28610622
Alignment:
Q  118 ctctttctggatattgtagtccgcaagagttctaccgtcttctagctgttttccggcgaagatgagacgttgttggtcaggtggaattccttctttgtct 217  Q
    ||||||||||||||| || |||||||||||||| || ||||| | ||| || || || ||||| |  ||||| || || |||||||| ||||| ||||||    
T  28610783 ctctttctggatattataatccgcaagagttcttccatcttccaactgcttccctgcaaagatcaatcgttgctgatccggtggaatgccttccttgtct 28610684  T
Q  218 tggattttggctttgacgttgtcgattgtgtcggatgattctacctctagggttattgtttt 279  Q
    || || || || || ||||||||||||||||| || ||||| || || |||||||| |||||    
T  28610683 tgaatcttcgccttcacgttgtcgattgtgtcagaagattcaacttccagggttatggtttt 28610622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 124; Significance: 2e-63; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 82 - 309
Target Start/End: Complemental strand, 14677269 - 14677042
Alignment:
Q  82 gccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctaccgtcttctagctgttttccggcgaagatg 181  Q
    |||||||||||||||||||||||||||||| ||||| || |||||||| |||||||| || ||||| |  |||||||| |||||||||||||||||||||    
T  14677269 gccaccacggagacggagaacaaggtgaagagtggattccttctggatgttgtagtcggcgagagtgcggccgtcttccagctgttttccggcgaagatg 14677170  T
Q  182 agacgttgttggtcaggtggaattccttctttgtcttggattttggctttgacgttgtcgattgtgtcggatgattctacctctagggttattgttttgc 281  Q
    |||||||||||||| ||||| |||||||||||||||||||| |||||||| || |||||||| ||||| || ||||| || || ||||||||||| || |    
T  14677169 agacgttgttggtccggtgggattccttctttgtcttggatcttggctttcacattgtcgatggtgtctgaagattcaacttcgagggttattgtcttcc 14677070  T
Q  282 cggtcaaggttttcacgaaaatctgcat 309  Q
    |||| | |||||||||||| ||||||||    
T  14677069 cggttagggttttcacgaagatctgcat 14677042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 14677121 - 14677042
Alignment:
Q  2 ttcacgttgtcgattgtgtcagaagatgcaacgtccagggttatggttttccctgttagggttttgacaaagatttgcat 81  Q
    ||||| |||||||| ||||| |||||| |||| || |||||||| || ||||| ||||||||||| || ||||| |||||    
T  14677121 ttcacattgtcgatggtgtctgaagattcaacttcgagggttattgtcttcccggttagggttttcacgaagatctgcat 14677042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 4e-49; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 82 - 309
Target Start/End: Complemental strand, 36460086 - 36459859
Alignment:
Q  82 gccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctaccgtcttctagctgttttccggcgaagatg 181  Q
    ||||||||| ||||| || ||||||||||| ||||| || |||||||| |||||||| || ||||| |  |||||||| | ||| |||||||||||||||    
T  36460086 gccaccacgaagacgtaggacaaggtgaagagtggattccttctggatgttgtagtcggcgagagtgcgtccgtcttccaactgctttccggcgaagatg 36459987  T
Q  182 agacgttgttggtcaggtggaattccttctttgtcttggattttggctttgacgttgtcgattgtgtcggatgattctacctctagggttattgttttgc 281  Q
    |||||||| |||||||||||||||||||| || || ||||| ||||||||||| ||||||||||||||||| || || ||||| |||||||| || || |    
T  36459986 agacgttgctggtcaggtggaattccttccttatcctggatcttggctttgacattgtcgattgtgtcggaagactcaacctcgagggttatcgtcttcc 36459887  T
Q  282 cggtcaaggttttcacgaaaatctgcat 309  Q
    | || | |||||||||||| ||||||||    
T  36459886 ctgttagggttttcacgaagatctgcat 36459859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 59 - 310
Target Start/End: Complemental strand, 33775222 - 33774971
Alignment:
Q  59 agggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctaccgtctt 158  Q
    ||||| |||| |||||| ||||| |||||||| |||||||| ||||| ||||| || ||||| |||||||| ||||| || ||||| || |  ||||| |    
T  33775222 agggtcttgataaagatctgcataccaccacgtagacggaggacaagatgaagggtagactccttctggatgttgtaatcagcaagggtgcggccgtcct 33775123  T
Q  159 ctagctgttttccggcgaagatgagacgttgttggtcaggtggaattccttctttgtcttggattttggctttgacgttgtcgattgtgtcggatgattc 258  Q
    | ||||| |||||||||||||| |  |  || |||||  | ||||||||||| || || ||||| |||||||||||||||||||| ||||||||   |||    
T  33775122 cgagctgctttccggcgaagatcaacctctgctggtccaggggaattccttccttatcctggatcttggctttgacgttgtcgatggtgtcggagctttc 33775023  T
Q  259 tacctctagggttattgttttgccggtcaaggttttcacgaaaatctgcatg 310  Q
     ||||| |||||  | || |||||||| | ||| || ||||| |||||||||    
T  33775022 gacctcaagggtggtggtcttgccggtgagggtcttaacgaagatctgcatg 33774971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 77 - 171
Target Start/End: Original strand, 35000134 - 35000228
Alignment:
Q  77 tgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctaccgtcttctagctgttttcc 171  Q
    ||||| |||||||| ||||| | |||||||||||| || |||||||||||||| ||||| || ||||||||||| || ||||| ||||| |||||    
T  35000134 tgcataccaccacgaagacgcaaaacaaggtgaagagttgactctttctggatgttgtaatcagcaagagttctgccatcttcgagctgctttcc 35000228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 33773070 - 33772995
Alignment:
Q  177 agatgagacgttgttggtcaggtggaattccttctttgtcttggattttggctttgacgttgtcgattgtgtcgga 252  Q
    ||||||||||||| ||||| || ||||||||||| ||||| ||||| || || || ||||||||||| ||||||||    
T  33773070 agatgagacgttgctggtccgggggaattccttccttgtcctggatcttagccttaacgttgtcgatggtgtcgga 33772995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 71 - 182
Target Start/End: Complemental strand, 33774982 - 33774871
Alignment:
Q  71 aagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctaccgtcttctagctgttttc 170  Q
    ||||| |||||||||||||| |||| ||| ||||||||||| |||   || |||||||| |||||||| || || || | |||||| || || || ||||    
T  33774982 aagatctgcatgccaccacgtagacagaggacaaggtgaagggtgctttccttctggatgttgtagtcagctagggtacgaccgtcctcgagttgctttc 33774883  T
Q  171 cggcgaagatga 182  Q
    ||||||||||||    
T  33774882 cggcgaagatga 33774871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 36459932 - 36459859
Alignment:
Q  8 ttgtcgattgtgtcagaagatgcaacgtccagggttatggttttccctgttagggttttgacaaagatttgcat 81  Q
    |||||||||||||| |||||  |||| || |||||||| || ||||||||||||||||| || ||||| |||||    
T  36459932 ttgtcgattgtgtcggaagactcaacctcgagggttatcgtcttccctgttagggttttcacgaagatctgcat 36459859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 228
Target Start/End: Original strand, 35000581 - 35000741
Alignment:
Q  68 acaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctaccgtcttctagctgtt 167  Q
    ||||| |||||||| ||||||||||||||||| || |  ||||| || ||||| || ||||| || || |||||||| || |  || || || || ||||    
T  35000581 acaaatatttgcataccaccacggagacggagcaccaaatgaagggtagactccttttggatgttataatccgcaagggtacgcccatcctccagttgtt 35000680  T
Q  168 ttccggcgaagatgagacgttgttggtcaggtggaattccttctttgtcttggattttggc 228  Q
    | || || || |||||||| || || |||||||| || ||||| |||||||| || |||||    
T  35000681 tgccagcaaaaatgagacgctgctgatcaggtgggatcccttccttgtcttgaatcttggc 35000741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 53 - 252
Target Start/End: Complemental strand, 47990106 - 47989907
Alignment:
Q  53 cctgttagggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctac 152  Q
    ||||| |||||||| ||||| || ||||| |||||||| || || | ||| || ||||| || |||||||||||||| || || || || |  ||||| |    
T  47990106 cctgtaagggtttttacaaaaatctgcataccaccacgaagtcgcaaaacgagatgaagagttgactctttctggatgttataatcggccaatgttctgc 47990007  T
Q  153 cgtcttctagctgttttccggcgaagatgagacgttgttggtcaggtggaattccttctttgtcttggattttggctttgacgttgtcgattgtgtcgga 252  Q
    | ||||| ||||||||||| || |||||||| |  || ||||||||||| || ||||| |||||||| || ||||| ||||| ||||| ||||| |||||    
T  47990006 catcttcaagctgttttccagcaaagatgagcctctgctggtcaggtgggatcccttccttgtcttgaatcttggccttgacattgtcaattgtatcgga 47989907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 252
Target Start/End: Complemental strand, 47989884 - 47989679
Alignment:
Q  47 gttttccctgttagggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagag 146  Q
    ||||| ||||| || || || |||||||||||||| |||||||| |||||||| || | ||| || |||||||| || ||||| ||||| || ||||| |    
T  47989884 gtttttcctgtgagagtcttcacaaagatttgcatcccaccacgaagacggagcaccaagtggagtgtggactccttttggatgttgtaatctgcaaggg 47989785  T
Q  147 ttctaccgtcttctagctgttttccggcgaagatgagacgttgttggtcaggtggaattccttctttgtcttggattttggctttgacgttgtcgattgt 246  Q
    | |  |||||||| ||||| || ||||| || || ||||| || ||||| || || || ||||| |||||||| || ||||| || || ||||| |||||    
T  47989784 tacgcccgtcttccagctgcttgccggcaaaaattagacgctgctggtctggagggatcccttccttgtcttgaatcttggccttaacattgtcaattgt 47989685  T
Q  247 gtcgga 252  Q
     |||||    
T  47989684 atcgga 47989679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 53 - 171
Target Start/End: Original strand, 35109745 - 35109863
Alignment:
Q  53 cctgttagggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctac 152  Q
    ||||| ||||| || ||||| || ||||| |||||||| ||||| |  ||||||||||| || |||||||||||||| ||||| || ||||||||||| |    
T  35109745 cctgtaagggtctttacaaaaatctgcataccaccacgaagacgcaagacaaggtgaagagttgactctttctggatgttgtaatcagcaagagttctgc 35109844  T
Q  153 cgtcttctagctgttttcc 171  Q
    | ||||| |||||||||||    
T  35109845 catcttcaagctgttttcc 35109863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 53 - 171
Target Start/End: Original strand, 35109973 - 35110091
Alignment:
Q  53 cctgttagggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctac 152  Q
    ||||| ||||| || ||||| || ||||| |||||||| ||||| |  ||||||||||| || |||||||||||||| ||||| || ||||||||||| |    
T  35109973 cctgtaagggtctttacaaaaatctgcataccaccacgaagacgcaagacaaggtgaagagttgactctttctggatgttgtaatcagcaagagttctgc 35110072  T
Q  153 cgtcttctagctgttttcc 171  Q
    | ||||| |||||||||||    
T  35110073 catcttcaagctgttttcc 35110091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 53 - 171
Target Start/End: Original strand, 35110201 - 35110319
Alignment:
Q  53 cctgttagggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctac 152  Q
    ||||| ||||| || ||||| || ||||| |||||||| ||||| |  ||||||||||| || |||||||||||||| ||||| || ||||||||||| |    
T  35110201 cctgtaagggtctttacaaaaatctgcataccaccacgaagacgcaagacaaggtgaagagttgactctttctggatgttgtaatcagcaagagttctgc 35110300  T
Q  153 cgtcttctagctgttttcc 171  Q
    | ||||| |||||||||||    
T  35110301 catcttcaagctgttttcc 35110319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 53 - 171
Target Start/End: Original strand, 35110429 - 35110547
Alignment:
Q  53 cctgttagggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctac 152  Q
    ||||| ||||| || ||||| || ||||| |||||||| ||||| |  ||||||||||| || |||||||||||||| ||||| || ||||||||||| |    
T  35110429 cctgtaagggtctttacaaaaatctgcataccaccacgaagacgcaagacaaggtgaagagttgactctttctggatgttgtaatcagcaagagttctgc 35110528  T
Q  153 cgtcttctagctgttttcc 171  Q
    | ||||| |||||||||||    
T  35110529 catcttcaagctgttttcc 35110547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 53 - 171
Target Start/End: Original strand, 35110657 - 35110775
Alignment:
Q  53 cctgttagggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctac 152  Q
    ||||| ||||| || ||||| || ||||| |||||||| ||||| |  ||||||||||| || |||||||||||||| ||||| || ||||||||||| |    
T  35110657 cctgtaagggtctttacaaaaatctgcataccaccacgaagacgcaagacaaggtgaagagttgactctttctggatgttgtaatcagcaagagttctgc 35110756  T
Q  153 cgtcttctagctgttttcc 171  Q
    | ||||| |||||||||||    
T  35110757 catcttcaagctgttttcc 35110775  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 209 - 310
Target Start/End: Original strand, 31288115 - 31288216
Alignment:
Q  209 tctttgtcttggattttggctttgacgttgtcgattgtgtcggatgattctacctctagggttattgttttgccggtcaaggttttcacgaaaatctgca 308  Q
    |||||||||||||| ||||| ||||| || || ||||| || |||||||| ||||| ||||| |||||||| |||||||| || ||||| || |||||||    
T  31288115 tctttgtcttggatcttggccttgacattatcaattgtatcagatgattcaacctcaagggtgattgtttttccggtcaatgtcttcacaaatatctgca 31288214  T
Q  309 tg 310  Q
    ||    
T  31288215 tg 31288216  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 171
Target Start/End: Complemental strand, 36294568 - 36294465
Alignment:
Q  68 acaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctaccgtcttctagctgtt 167  Q
    ||||| || ||||| |||||||| ||||| |  ||||||||||| || |||||||||||||| ||||| || ||||||||||| || ||||| ||||| |    
T  36294568 acaaaaatctgcataccaccacgaagacgcaagacaaggtgaagagttgactctttctggatgttgtaatcagcaagagttctgccatcttcaagctgct 36294469  T
Q  168 ttcc 171  Q
    ||||    
T  36294468 ttcc 36294465  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 171
Target Start/End: Original strand, 35109511 - 35109635
Alignment:
Q  47 gttttccctgttagggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagag 146  Q
    ||||| ||||| || || || ||||| || ||||| ||||| || ||||| |  ||||||||||| || |||||||||||||| ||||| || |||||||    
T  35109511 gttttgcctgtgagtgtcttaacaaaaatctgcataccaccgcgaagacgcaagacaaggtgaagagtcgactctttctggatgttgtaatcagcaagag 35109610  T
Q  147 ttctaccgtcttctagctgttttcc 171  Q
    |||| || ||||| ||||| |||||    
T  35109611 ttctgccatcttcaagctgctttcc 35109635  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 194 - 309
Target Start/End: Original strand, 31260593 - 31260708
Alignment:
Q  194 tcaggtggaattccttctttgtcttggattttggctttgacgttgtcgattgtgtcggatgattctacctctagggttattgttttgccggtcaaggttt 293  Q
    ||||| || ||||| ||||||||||| || ||||| ||||| || || ||||| || |||||||| ||||| ||||| || ||||| || ||||| ||||    
T  31260593 tcaggagggattccctctttgtcttgaatcttggccttgacattatcaattgtatctgatgattccacctcaagggtgatggttttaccagtcaatgttt 31260692  T
Q  294 tcacgaaaatctgcat 309  Q
    ||||||| || |||||    
T  31260693 tcacgaagatttgcat 31260708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 68 - 219
Target Start/End: Complemental strand, 36294112 - 36293961
Alignment:
Q  68 acaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctaccgtcttctagctgtt 167  Q
    ||||| |||||||| ||||||||||||||||| || |  || || |||||||| |||||||| || || || ||||| || |  || || || ||||| |    
T  36294112 acaaatatttgcataccaccacggagacggagcaccaaatggagggtggactccttctggatgttataatcagcaagggtacgcccatcctccagctgct 36294013  T
Q  168 ttccggcgaagatgagacgttgttggtcaggtggaattccttctttgtcttg 219  Q
    |||| || || || ||||| || ||||||||||| |||||||| ||||||||    
T  36294012 ttccagcaaaaatcagacgctgctggtcaggtgggattccttccttgtcttg 36293961  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 249
Target Start/End: Complemental strand, 36294817 - 36294615
Alignment:
Q  47 gttttccctgttagggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagag 146  Q
    ||||| || |||||||| || ||||| || ||||| |||||||| || || |  ||||| ||||| || ||||||||||||||||| || || || ||||    
T  36294817 gtttttccagttagggtcttaacaaaaatctgcataccaccacgaagccgcaagacaagatgaagagtcgactctttctggatattataatcagccagag 36294718  T
Q  147 ttctaccgtcttctagctgttttccggcgaagatgagacgttgttggtcaggtggaattccttctttgtcttggattttggctttgacgttgtcgattgt 246  Q
    ||| ||||||||| || || ||||| || || || |  | ||| ||||| || ||||| || || |||||||| || ||||| || || ||||| |||||    
T  36294717 ttcgaccgtcttcaagttgctttccagcaaaaatcaacctttgctggtctgggggaataccctccttgtcttgtatcttggccttcacattgtcaattgt 36294618  T
Q  247 gtc 249  Q
    |||    
T  36294617 gtc 36294615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 216
Target Start/End: Complemental strand, 36294292 - 36294192
Alignment:
Q  116 gactctttctggatattgtagtccgcaagagttctaccgtcttctagctgttttccggcgaagatgagacgttgttggtcaggtggaattccttctttgt 215  Q
    ||||| |||||||| |||||||| || |  ||||| || ||||| ||||||||||| || |||||||| |  || ||||| |||||||| ||||||||||    
T  36294292 gactccttctggatgttgtagtcagccaaggttctgccatcttcaagctgttttccagcaaagatgagcctctgctggtctggtggaataccttctttgt 36294193  T
Q  216 c 216  Q
    |    
T  36294192 c 36294192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 228
Target Start/End: Original strand, 35110885 - 35111060
Alignment:
Q  53 cctgttagggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctac 152  Q
    ||||| ||||| || ||||| || ||||| |||||||| || || | ||| || ||||| || |||||||||||||| || || || || |  ||||| |    
T  35110885 cctgtaagggtctttacaaaaatctgcataccaccacgaagtcgcaaaacgagatgaagagttgactctttctggatgttataatcggccaatgttctgc 35110984  T
Q  153 cgtcttctagctgttttccggcgaagatgagacgttgttggtcaggtggaattccttctttgtcttggattttggc 228  Q
    | ||||| ||||||||||| || |||||||| |  || ||||| ||||| || || ||||||||||| || |||||    
T  35110985 catcttcaagctgttttccagcaaagatgagcctctgctggtctggtgggataccctctttgtcttgtatcttggc 35111060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 225
Target Start/End: Complemental strand, 24039328 - 24039168
Alignment:
Q  65 ttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctaccgtcttctagct 164  Q
    ||||| ||||||||||| ||||||||||||||||| || |  || || |||||||| || ||||| ||||| || ||||| || |  || || || ||||    
T  24039328 ttgacgaagatttgcatcccaccacggagacggagcaccaaatggagggtggactccttttggatgttgtaatcagcaagggtacgcccatcctccagct 24039229  T
Q  165 gttttccggcgaagatgagacgttgttggtcaggtggaattccttctttgtcttggatttt 225  Q
    | || || || || || ||||| || ||||||||||| |||||||| |||||||| |||||    
T  24039228 gcttgccagcaaaaatcagacgctgctggtcaggtgggattccttccttgtcttgaatttt 24039168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 171
Target Start/End: Complemental strand, 24039562 - 24039450
Alignment:
Q  59 agggttttgacaaagatttgcatgccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttctaccgtctt 158  Q
    ||||| || ||||| || ||||| |||||||| || || |  ||||||||||| || |||||||| ||||| ||||| || ||||||||||| || ||||    
T  24039562 agggtcttcacaaaaatctgcataccaccacgaaggcgcaagacaaggtgaagagttgactctttttggatgttgtaatcggcaagagttctgccatctt 24039463  T
Q  159 ctagctgttttcc 171  Q
    | ||||| |||||    
T  24039462 caagctgctttcc 24039450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 150
Target Start/End: Complemental strand, 24039993 - 24039926
Alignment:
Q  83 ccaccacggagacggagaacaaggtgaagcgtggactctttctggatattgtagtccgcaagagttct 150  Q
    |||||||| ||||| | |||||||||||| || ||||||||||| || |||||||| ||||| |||||    
T  24039993 ccaccacgaagacgtaaaacaaggtgaagagtagactctttctgaatgttgtagtcagcaagggttct 24039926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 206 - 309
Target Start/End: Complemental strand, 42075679 - 42075576
Alignment:
Q  206 ccttctttgtcttggattttggctttgacgttgtcgattgtgtcggatgattctacctctagggttattgttttgccggtcaaggttttcacgaaaatct 305  Q
    ||||||||||| || || || ||||||||||| ||||| ||||||  ||| || ||||| ||||| || || |||||||| | |||||||||||| ||||    
T  42075679 ccttctttgtcctgaatcttagctttgacgttatcgatagtgtcgcttgactccacctcaagggtgatagtcttgccggttagggttttcacgaagatct 42075580  T
Q  306 gcat 309  Q
    ||||    
T  42075579 gcat 42075576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0971 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0971
Description:

Target: scaffold0971; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 47 - 3
Alignment:
Q  206 ccttctttgtcttggattttggctttgacgttgtcgattgtgtcg 250  Q
    ||||| |||||||| |||||||||||||| |||||||| ||||||    
T  47 ccttccttgtcttgaattttggctttgacattgtcgatggtgtcg 3  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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