View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1069_high_9 (Length: 475)

Name: NF1069_high_9
Description: NF1069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1069_high_9
NF1069_high_9
[»] chr4 (1 HSPs)
chr4 (72-422)||(25608976-25609335)
[»] scaffold1084 (1 HSPs)
scaffold1084 (72-109)||(127-164)


Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 72 - 422
Target Start/End: Original strand, 25608976 - 25609335
Alignment:
Q  72 caaaattccatttccatctagctacattggtccccattaaaccattttgagatgtagcagtagcagcagtatgattaattatgcattccattttgagcac 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||    
T  25608976 caaaattccatttccatctagctacattggtccccattaaaccattttgagatgtagcag------cagtatgattaattatgcattccattttgagcac 25609069  T
Q  172 ccaatcttaattatttctgatacttaccattttcagtaattcagtctccatgtggtccatatcattttgctggctaat------------------attg 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||                  ||||    
T  25609070 ccaatcttaattatttctgatacttaccattttcagtaattcagtctccaagtggtccatatcattttgctggctaatggcatagatcgatataatattg 25609169  T
Q  254 agtgatttacttacttattacgctgttgctcgcagtactctggtgggtgcaagtatcaagtttcagcttttcaactcctcctcctctccaaggtgtaatg 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  25609170 agtgatttacttacttattacgctgttgctcgcagtactctggtgggtgcaagtatcaagtttcagcttttcaa---ctcctcctctccaaggtgtaatg 25609266  T
Q  354 taatatacattttacatttttgtttgaactcatttaagtcttggttatattttcaacttgttgtgtctc 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25609267 taatatacattttacatttttgtttgaactcatttaagtcttggttatattttgaacttgttgtgtctc 25609335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1084 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold1084
Description:

Target: scaffold1084; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 127 - 164
Alignment:
Q  72 caaaattccatttccatctagctacattggtccccatt 109  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  127 caaaattccatttccatctagctacattggtccacatt 164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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