View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1069_low_1 (Length: 812)

Name: NF1069_low_1
Description: NF1069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1069_low_1
NF1069_low_1
[»] chr7 (1 HSPs)
chr7 (11-781)||(25131234-25131996)


Alignment Details
Target: chr7 (Bit Score: 643; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 11 - 781
Target Start/End: Complemental strand, 25131996 - 25131234
Alignment:
Q  11 caaagggatatgccctaacaagaagtgaagcaaaacagaagggaaggggaatggaagtgaagccaataaagttccaaaatacctgtcagtttatacagcc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25131996 caaagggatatgccctaacaagaagtgaagcaaaacagaagggaaggggaatggaagtgaagccaataaagttccaaaagacctgtcagtttatacagcc 25131897  T
Q  111 actgaagccaaacaaagaggaatggaagtgaaaaagaaactttaaatgaaatattttctgcaggacgtaatattttagcaagcaatatctaaagaaattt 210  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25131896 actgaagccaaacaaagaggaatggaagtgaaaaagaaacttcaaatgaaatattttctgcaggacgtaatattttagcaaacaatatctaaagaaattt 25131797  T
Q  211 taaaatcatgaaacctaccgtaggattaacatgctatagaaaaagcatttacgaaagaacatattccactccaaagaagatcaaagagagttcttaattc 310  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25131796 taaaatcatgaaacctaccataggattaacatgctatagaaaaagcatttacgaaagaacatattccactccaaagaagatcaaagagagttcttaattc 25131697  T
Q  311 tatcagtaaacattatacttagtcacacaaatctcatcctcttnnnnnnnnttagtctgattgaagaaacttattaaataata----agacataaagaaa 406  Q
    |||||||||||||||||||||||||| ||||||||||||||||        ||||| ||||||||||||||||||||||||||    |||||||||||||    
T  25131696 tatcagtaaacattatacttagtcacgcaaatctcatcctcttaaaaaaa-ttagtttgattgaagaaacttattaaataataggtaagacataaagaaa 25131598  T
Q  407 ttgaaaggcatcattattattctaccagattcgtgttttaattcagttgtggattgtgcagttctcgattttgttattttcaaatatgatctagaagttc 506  Q
    |||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25131597 ttg-----------tattattctaccagattcgtgttttaattcagttgtggattgtgcagttctcgattttgttattttcaaatatgatctagaagttc 25131509  T
Q  507 gctgcccaattcagaaaatttgtgaattattgtgggtgatagtttatcagcccaagcttcagatttcattcttatagttctgttttaaattgccttatat 606  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25131508 gctacccaattcagaaaatttgtgaattattgtgggtgatagtttatcagcccaagcttcagatttcattcttatagttctgttttatattgccttatat 25131409  T
Q  607 caaacatgattttagaaagtaaaaacaagaaagaaaaagagccgtttggtaacttttgaatcaaaattgaaggtttgactagactgataaaaagtagctc 706  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25131408 caaacatgattttagaaagtaaaaacaagaaagaaaaagagccgtttggtaacttttgaatcaaaattgaaggtttgactagactgctaaaaagtagctc 25131309  T
Q  707 tgccattagattgaaaacttacactaagctacacaccaaacttgtttatagactaaaaacatataagatgaatca 781  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  25131308 tgccattagattgaaaacttacacttagctacacatcaaacttgttcatagactaaaaacatataagatgaatca 25131234  T

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