View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1069_low_10 (Length: 479)
Name: NF1069_low_10
Description: NF1069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1069_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 10 - 450
Target Start/End: Complemental strand, 606554 - 606114
Alignment:
| Q |
10 |
aagaatattgaagccccagaaactttcttcccattcggagtataatatccatgactagtattccctccagaaggagtatccaaccccataattcgatccc |
109 |
Q |
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| T |
606554 |
aagaatattgaagccccagaaactttcttcccattcggagtataatatccatgactagtattccctccagaaggagtatccaaccccataattcgatccc |
606455 |
T |
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| Q |
110 |
cgggcgccaacaatccagtatacacagcaaaattagccgaagtacacgaatatggctgcacattcacaccccaacacttaggatcaagattaaacgcagc |
209 |
Q |
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| T |
606454 |
cgggcgccaacaatccagtatacacagcaaaattagccgaagtacacgaatatggctgcacattcacaccccaacacttaggatcaagattaaacgcagc |
606355 |
T |
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| Q |
210 |
caaagcacgctcgcaacaaagtgtttcaatttcatctatatattgatttccaccatagtaacgtgcaccaggcattccttcagagtatttattcgttaaa |
309 |
Q |
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| T |
606354 |
caaagcacgctcgcaacaaagtgtttcaatttcatctatatattgatttccaccatagtaacgtgcaccaggcattccttcagagtatttattcgttaaa |
606255 |
T |
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| Q |
310 |
tggcttccaagcgcttccattacagccctgcaaacaaaattctcagaagctatcaattcaatccctttgaattgacgctttttctctttttctataatct |
409 |
Q |
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| T |
606254 |
tggcttccaagcgcttccattacagccctgcaaacaaaattctcagaagctatcaattcaatccctttgaattgacgctttttctctttttctataatct |
606155 |
T |
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| Q |
410 |
catatatatcaggatccgctacctgtaagggttgatcaccc |
450 |
Q |
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| T |
606154 |
catatatatcaggatccgctacctgtaagggttgatcaccc |
606114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 377
Target Start/End: Complemental strand, 33130669 - 33130572
Alignment:
| Q |
280 |
ggcattccttcagagtatttattcgttaaatggcttccaagcgcttccattacagccctgcaaacaaaattctcagaagctatcaattcaatcccttt |
377 |
Q |
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| T |
33130669 |
ggcattccctctgaatacttattagtcaaatgactaccaagtgcttccatcacagccctacaaacaaaattctcagaagcaattaattcaattccttt |
33130572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 183
Target Start/End: Complemental strand, 33130862 - 33130766
Alignment:
| Q |
87 |
atccaaccccataattcgatccccgggcgccaacaatccagtatacacagcaaaattagccgaagtacacgaatatggctgcacattcacaccccaa |
183 |
Q |
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| T |
33130862 |
atccaaccccataatcctatccccaggattcaaaagaccagtataaacagcaaaattagctgaagtgcatgaataaggctgaacattaacaccccaa |
33130766 |
T |
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