View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1069_low_12 (Length: 457)
Name: NF1069_low_12
Description: NF1069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1069_low_12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 29 - 457
Target Start/End: Original strand, 13768210 - 13768638
Alignment:
| Q |
29 |
ataatatccacaaggatatgcttgaagaatcaacaaagtgtaaaaccaaaatggatttgaaggaacaacttttcgaagtttataatgctctagacaagcc |
128 |
Q |
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| T |
13768210 |
ataatatccacaaggatatgcttgaagaatcaacaaagtgtaaaaccaaaatggatttgaaggaacaacttttcgaagtttataatgctctagacaagcc |
13768309 |
T |
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| Q |
129 |
aaacattgaattggatgatagaacatgtgaaataagtgaaatggaatttgaattacaaatgtggaagtcgtttgtcaaaagtttgaagaacgatcttgaa |
228 |
Q |
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| T |
13768310 |
aaatattgaattggatgatagaacatgtgaaataagtgaaatggaatttgaattacaaatgtggaagtcgtttgtcaaaagtttgaagaacgatcttgaa |
13768409 |
T |
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| Q |
229 |
gaaaaccgcgtaatgcgaaaagcactcgaaaattcactacttgctcaagtagattttaatgtaagactcaagcaaaagatagatagcttggaacataagt |
328 |
Q |
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| T |
13768410 |
gaaagccgcgtaatgcgaaaagcactcgaaaattcactacttgctcaagtagattttaatgtaagactcaagcaaaagatagatagcttggaacataagt |
13768509 |
T |
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| Q |
329 |
tggaagaggaagagaataaaataaattatcttcaactacatctttttgtattggaacaagcactaaaagaaagggacacaaaagcttctgaaccagaaca |
428 |
Q |
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| T |
13768510 |
tggaagaggaagagaataaaataaattatcttcaactacatctttttgtattggaacaagcactaaaagaaagggacgcaaaagcttctgaaccagaaca |
13768609 |
T |
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| Q |
429 |
atttagaagagagtttgatagtgttgtga |
457 |
Q |
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| T |
13768610 |
atttagaagagagtttgatagtgttgtga |
13768638 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 135 - 232
Target Start/End: Original strand, 28765370 - 28765467
Alignment:
| Q |
135 |
tgaattggatgatagaacatgtgaaataagtgaaatggaatttgaattacaaatgtggaagtcgtttgtcaaaagtttgaagaacgatcttgaagaaa |
232 |
Q |
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| T |
28765370 |
tgaactggatgagagaatttgcgaaagaagtgaaatggaatttgaattgcaaatatggaagtcaattcttgatcgtttgaagaatgatcttgaagaaa |
28765467 |
T |
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