View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1069_low_13 (Length: 453)

Name: NF1069_low_13
Description: NF1069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1069_low_13
NF1069_low_13
[»] chr1 (3 HSPs)
chr1 (41-429)||(6831711-6832099)
chr1 (267-415)||(26403936-26404084)
chr1 (249-379)||(49213355-49213485)
[»] chr4 (4 HSPs)
chr4 (109-429)||(28393996-28394316)
chr4 (267-415)||(1544303-1544451)
chr4 (41-107)||(28394463-28394529)
chr4 (249-379)||(25431513-25431643)
[»] chr8 (7 HSPs)
chr8 (109-429)||(32528209-32528529)
chr8 (109-382)||(26344461-26344734)
chr8 (41-107)||(32528676-32528742)
chr8 (41-102)||(26344886-26344947)
chr8 (336-392)||(32851444-32851500)
chr8 (336-392)||(37174587-37174643)
chr8 (270-394)||(43444555-43444679)
[»] scaffold0438 (1 HSPs)
scaffold0438 (232-382)||(14622-14772)
[»] chr2 (2 HSPs)
chr2 (141-316)||(43372845-43373022)
chr2 (368-429)||(43372768-43372829)
[»] chr6 (3 HSPs)
chr6 (267-415)||(7037007-7037155)
chr6 (322-394)||(26257005-26257077)
chr6 (336-392)||(20737934-20737990)
[»] chr5 (1 HSPs)
chr5 (267-415)||(17796425-17796573)
[»] chr7 (3 HSPs)
chr7 (270-394)||(8988982-8989106)
chr7 (270-394)||(43585867-43585991)
chr7 (267-415)||(30506893-30507042)


Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 41 - 429
Target Start/End: Original strand, 6831711 - 6832099
Alignment:
Q  41 aaccaagtgtgaaacaatagccataagtgtttttcatttcatcagcagaacctccccaatcgttgtcacattcaaaatatcaggccgtgtggctatcaga 140  Q
    ||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||| | |||| ||||||||||||||||||| |||| | |||||    
T  6831711 aaccaagtgtgaaacaatagccagaagtgcttttcatatcatcagcagaacctccccaattgctgtcgcattcaaaatatcaggccgcgtggttgtcaga 6831810  T
Q  141 tacatcaaacaaccgatcagacttctaaaatatgcttgatcaatcttttcagttccatcttctttgcaaagtttctcctttgaattcattggagtgctca 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  6831811 tacatcaaacaaccgatcagacttctaaaatatgcttgatcaatcttttcagttccatcttctttgccaagcttctcctttgaattcattggagtgctca 6831910  T
Q  241 tttatctacattcttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaaatgaaaatttcatccttgatttgcttgatttccattcc 340  Q
    ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6831911 tttctctgcattcttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaaatggaaatttcatccttgatttgcttgatttccattcc 6832010  T
Q  341 aagaaagtaagtcactaatccaagatctgtcatctcaaattccttcatcatttccaatttaaattcatcaatcaatgcaacattatttc 429  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6832011 aagaaagtaagtcattaatccaagatctgtcatctcaaattccttcatcatttccaatttaaattcatcaatcaatgcaacattatttc 6832099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 267 - 415
Target Start/End: Complemental strand, 26404084 - 26403936
Alignment:
Q  267 tttttcaaaatttcttttgcgtatttcttttgacaaatgaaaatttcatccttga-tttgcttgatttccattccaagaaagtaagtcactaatccaaga 365  Q
    ||||||| ||||||  |||| |||||||||||||||||||||| |||||| |||| ||||||| || |||||||| |||||  ||||||  |  ||||||    
T  26404084 tttttcagaatttcccttgcatatttcttttgacaaatgaaaacttcatc-ttgactttgcttaatctccattccgagaaaaaaagtcatcagcccaaga 26403986  T
Q  366 tctgtcatctcaaattccttcatcatttccaatttaaattcatcaatcaa 415  Q
    ||||||||||||||| | ||  |||||||||  || ||||||||||||||    
T  26403985 tctgtcatctcaaatacttttgtcatttccatcttgaattcatcaatcaa 26403936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 379
Target Start/End: Complemental strand, 49213485 - 49213355
Alignment:
Q  249 cattcttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaaatgaaaatttcatccttgatttgcttgatttccattccaagaaagt 348  Q
    ||||| ||||| | ||| ||||||||||| || ||||| ||||| || |||||||| ||||| |||| |||  ||||  |||||||||| || | ||| |    
T  49213485 cattcatcaagctgaaattttttcaaaatctcctttgcatattttttctgacaaataaaaatctcattcttcttttgagtgatttccatgcccaaaaaat 49213386  T
Q  349 aagtcactaatccaagatctgtcatctcaaa 379  Q
    ||||||  |  |||||||| |||||||||||    
T  49213385 aagtcataagaccaagatcagtcatctcaaa 49213355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 109 - 429
Target Start/End: Complemental strand, 28394316 - 28393996
Alignment:
Q  109 cattcaaaatatcaggccgtgtggctatcagatacatcaaacaaccgatcagacttctaaaatatgcttgatcaatcttttcagttccatcttctttgca 208  Q
    ||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28394316 cattcaaaatatcaggccgcgttgctgtcagatacatcaaacaaccgatcagacttctaaaatatgcttgatcaatcttttcagttccatcttctttgca 28394217  T
Q  209 aagtttctcctttgaattcattggagtgctcatttatctacattcttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaaatgaaa 308  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28394216 aagtttctcctttgaattcattggagtgctcatttatctgcattcttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaaatgaaa 28394117  T
Q  309 atttcatccttgatttgcttgatttccattccaagaaagtaagtcactaatccaagatctgtcatctcaaattccttcatcatttccaatttaaattcat 408  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28394116 atttcatccttgctttgcttgatttccattccaagaaagtaagtcattaatccaagatctgtcatctcaaattccttcatcatttccaatttaaattcat 28394017  T
Q  409 caatcaatgcaacattatttc 429  Q
    |||||||||||||||||||||    
T  28394016 caatcaatgcaacattatttc 28393996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 267 - 415
Target Start/End: Complemental strand, 1544451 - 1544303
Alignment:
Q  267 tttttcaaaatttcttttgcgtatttcttttgacaaatgaaaatttcatccttga-tttgcttgatttccattccaagaaagtaagtcactaatccaaga 365  Q
    ||||||| ||||||  |||| |||||||||||||||||||||| |||||| |||| ||||||| || |||||||| |||||  ||||||  |  ||||||    
T  1544451 tttttcagaatttcccttgcatatttcttttgacaaatgaaaacttcatc-ttgactttgcttaatctccattccgagaaaaaaagtcatcagcccaaga 1544353  T
Q  366 tctgtcatctcaaattccttcatcatttccaatttaaattcatcaatcaa 415  Q
    ||||||||||||||| | ||  |||||||||  || ||||||||||||||    
T  1544352 tctgtcatctcaaatacttttgtcatttccatcttgaattcatcaatcaa 1544303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 28394529 - 28394463
Alignment:
Q  41 aaccaagtgtgaaacaatagccataagtgtttttcatttcatcagcagaacctccccaatcgttgtc 107  Q
    |||| |||| ||||||||||||| ||||| ||||||| |||||||||||||||||||||||| ||||    
T  28394529 aacctagtgagaaacaatagccagaagtgcttttcatatcatcagcagaacctccccaatcgctgtc 28394463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 379
Target Start/End: Complemental strand, 25431643 - 25431513
Alignment:
Q  249 cattcttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaaatgaaaatttcatccttgatttgcttgatttccattccaagaaagt 348  Q
    ||||| ||||| | ||| ||||||||||| || ||||| ||||| || |||||||| ||||| |||| |||  ||||  |||||||||| || | ||| |    
T  25431643 cattcatcaagctgaaattttttcaaaatctcctttgcatattttttctgacaaataaaaatctcattcttcttttgagtgatttccatgcccaaaaaat 25431544  T
Q  349 aagtcactaatccaagatctgtcatctcaaa 379  Q
    ||||||  |  |||||||| |||||||||||    
T  25431543 aagtcataagaccaagatcagtcatctcaaa 25431513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 109 - 429
Target Start/End: Complemental strand, 32528529 - 32528209
Alignment:
Q  109 cattcaaaatatcaggccgtgtggctatcagatacatcaaacaaccgatcagacttctaaaatatgcttgatcaatcttttcagttccatcttctttgca 208  Q
    |||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32528529 cattcaaaatatcaggccgcatggctgtcagatacatcaaacaaccgatcagacttctaaaatatgcttgatcaatcttttcagttccatcttctttgca 32528430  T
Q  209 aagtttctcctttgaattcattggagtgctcatttatctacattcttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaaatgaaa 308  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32528429 aagtttctcctttgaattcattggagtgctcatttctctgcattcttcaagtttaaactttttcaaaatttcttttgcgtatttcatttgacaaatgaaa 32528330  T
Q  309 atttcatccttgatttgcttgatttccattccaagaaagtaagtcactaatccaagatctgtcatctcaaattccttcatcatttccaatttaaattcat 408  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32528329 attttatccttgctttgcttgatttccattccaagaaagtaagtcattaatccaagatctgtcatctcaaattccttcatcatttccaatttaaattcat 32528230  T
Q  409 caatcaatgcaacattatttc 429  Q
    ||||||||||| |||||||||    
T  32528229 caatcaatgcatcattatttc 32528209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 109 - 382
Target Start/End: Complemental strand, 26344734 - 26344461
Alignment:
Q  109 cattcaaaatatcaggccgtgtggctatcagatacatcaaacaaccgatcagacttctaaaatatgcttgatcaatcttttcagttccatcttctttgca 208  Q
    |||||||||||| |||||| |||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26344734 cattcaaaatattaggccgcgtgggtgtcagatacatcaaacaaccgatcagacttctaaaatatgtttgatcaatcttttcagttccatcttctttgca 26344635  T
Q  209 aagtttctcctttgaattcattggagtgctcatttatctacattcttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaaatgaaa 308  Q
    ||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26344634 aagtttctcctttgaattcattggagtgctcatttctctgcatttttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaaatgaaa 26344535  T
Q  309 atttcatccttgatttgcttgatttccattccaagaaagtaagtcactaatccaagatctgtcatctcaaattc 382  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  26344534 atttcatccttgctttgcttgatttccattccaagaaagtaagtcattaatccaaaatctgtcatctcaaattc 26344461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 32528742 - 32528676
Alignment:
Q  41 aaccaagtgtgaaacaatagccataagtgtttttcatttcatcagcagaacctccccaatcgttgtc 107  Q
    ||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| ||||    
T  32528742 aaccaagtgtgaaacaatagccagaagtgcttttcatatcatcagcagaacctccccaatcgctgtc 32528676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 26344947 - 26344886
Alignment:
Q  41 aaccaagtgtgaaacaatagccataagtgtttttcatttcatcagcagaacctccccaatcg 102  Q
    ||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||| ||||||    
T  26344947 aaccaagtgtgaaacaatagccagaagtgcttttcatatcatcagcagaacctcctcaatcg 26344886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 392
Target Start/End: Original strand, 32851444 - 32851500
Alignment:
Q  336 attccaagaaagtaagtcactaatccaagatctgtcatctcaaattccttcatcatt 392  Q
    ||||||||||||||  ||| |||||||||||||||||||||| |||| |||||||||    
T  32851444 attccaagaaagtatttcattaatccaagatctgtcatctcatattctttcatcatt 32851500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 392
Target Start/End: Original strand, 37174587 - 37174643
Alignment:
Q  336 attccaagaaagtaagtcactaatccaagatctgtcatctcaaattccttcatcatt 392  Q
    ||||||||||||||  ||| |||||||||||||||||||||| |||| |||||||||    
T  37174587 attccaagaaagtatttcattaatccaagatctgtcatctcatattctttcatcatt 37174643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 394
Target Start/End: Complemental strand, 43444679 - 43444555
Alignment:
Q  270 ttcaaaatttcttttgcgtatttcttttgacaaatgaaaatttcatccttgatttgcttgatttccattccaagaaagtaagtcactaatccaagatctg 369  Q
    ||||| ||||||||||| ||||| ||||| |||||||| |  ||||  |   ||||||||||||| || ||||||||||||||||  |  ||||||||||    
T  43444679 ttcaatatttcttttgcatattttttttggcaaatgaacacctcattttcattttgcttgatttcaataccaagaaagtaagtcataagaccaagatctg 43444580  T
Q  370 tcatctcaaattccttcatcatttc 394  Q
    |||| |||||  ||| |||||||||    
T  43444579 tcatttcaaaagcctacatcatttc 43444555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 232 - 382
Target Start/End: Complemental strand, 14772 - 14622
Alignment:
Q  232 gagtgctcatttatctacattcttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaaatgaaaatttcatccttgatttgcttgat 331  Q
    |||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14772 gagtgctcatttctctgcatttttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaaatgaaaatttcatccttgctttgcttgat 14673  T
Q  332 ttccattccaagaaagtaagtcactaatccaagatctgtcatctcaaattc 382  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  14672 ttccattccaagaaagtaagtcattaatccaaaatctgtcatctcaaattc 14622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 141 - 316
Target Start/End: Complemental strand, 43373022 - 43372845
Alignment:
Q  141 tacatcaaacaaccgatcagacttctaaaatatgcttgatcaatctttt--cagttccatcttctttgcaaagtttctcctttgaattcattggagtgct 238  Q
    |||||||||||||| || |||||||||||||| ||||||||||||||||  ||||| |||||||||||| ||||||||| |||||||||||||||||| |    
T  43373022 tacatcaaacaaccaattagacttctaaaatacgcttgatcaatcttttttcagtttcatcttctttgcgaagtttctcttttgaattcattggagtggt 43372923  T
Q  239 catttatctacattcttcaagtttaaactttttcaaaatttcttttgcgtatttcttttgacaaatgaaaatttcatc 316  Q
    |||||   | |||||||| ||||||||||| || |  ||||||||||| ||||| || |||||| | |||| ||||||    
T  43372922 catttcattgcattcttcgagtttaaacttcttaatgatttcttttgcatattttttctgacaacttaaaacttcatc 43372845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 368 - 429
Target Start/End: Complemental strand, 43372829 - 43372768
Alignment:
Q  368 tgtcatctcaaattccttcatcatttccaatttaaattcatcaatcaatgcaacattatttc 429  Q
    ||||||||||||||| ||||| |||||||| ||||||||||||||||| ||  |||||||||    
T  43372829 tgtcatctcaaattctttcattatttccaacttaaattcatcaatcaaggctgcattatttc 43372768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 267 - 415
Target Start/End: Complemental strand, 7037155 - 7037007
Alignment:
Q  267 tttttcaaaatttcttttgcgtatttcttttgacaaatgaaaatttcatccttga-tttgcttgatttccattccaagaaagtaagtcactaatccaaga 365  Q
    ||||||| ||||||  |||| |||||||||||||||||||||| |||||| |||| ||||||| || |||||||| |||||  |||||| ||  ||||||    
T  7037155 tttttcagaatttcccttgcatatttcttttgacaaatgaaaacttcatc-ttgactttgcttaatctccattccgagaaaaaaagtcattagcccaaga 7037057  T
Q  366 tctgtcatctcaaattccttcatcatttccaatttaaattcatcaatcaa 415  Q
    ||||||||||||||| | ||  |||||||||  || ||||||||||||||    
T  7037056 tctgtcatctcaaatacttttgtcatttccatcttgaattcatcaatcaa 7037007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 394
Target Start/End: Complemental strand, 26257077 - 26257005
Alignment:
Q  322 tttgcttgatttccattccaagaaagtaagtcactaatccaagatctgtcatctcaaattccttcatcatttc 394  Q
    ||||||||||||| || ||||||||||||||||  |  |||||||||||||| |||||  |||||||||||||    
T  26257077 tttgcttgatttcaataccaagaaagtaagtcataagaccaagatctgtcatttcaaaagccttcatcatttc 26257005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 392
Target Start/End: Original strand, 20737934 - 20737990
Alignment:
Q  336 attccaagaaagtaagtcactaatccaagatctgtcatctcaaattccttcatcatt 392  Q
    ||||||||||||||  ||| |||||||| ||||||||||||| |||| |||||||||    
T  20737934 attccaagaaagtatttcattaatccaacatctgtcatctcatattctttcatcatt 20737990  T

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Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 267 - 415
Target Start/End: Complemental strand, 17796573 - 17796425
Alignment:
Q  267 tttttcaaaatttcttttgcgtatttcttttgacaaatgaaaatttcatccttga-tttgcttgatttccattccaagaaagtaagtcactaatccaaga 365  Q
    ||||||| ||||||  |||| |||||||||||||||||||||| |||||| |||| ||||||| || |||||||| |||||  ||||||  |  ||||||    
T  17796573 tttttcagaatttcccttgcatatttcttttgacaaatgaaaacttcatc-ttgactttgcttaatctccattccgagaaaaaaagtcatcagcccaaga 17796475  T
Q  366 tctgtcatctcaaattccttcatcatttccaatttaaattcatcaatcaa 415  Q
    ||||||||||||||| | ||  |||||||||  || |||| |||||||||    
T  17796474 tctgtcatctcaaatacttttgtcatttccatcttgaatttatcaatcaa 17796425  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 270 - 394
Target Start/End: Complemental strand, 8989106 - 8988982
Alignment:
Q  270 ttcaaaatttcttttgcgtatttcttttgacaaatgaaaatttcatccttgatttgcttgatttccattccaagaaagtaagtcactaatccaagatctg 369  Q
    ||||| ||||||||||| ||||| ||||| |||||||| |  ||||  |   ||||||||||||| || ||||||||||||||||  |  ||||||||||    
T  8989106 ttcaatatttcttttgcatattttttttggcaaatgaacacctcattttcattttgcttgatttcaataccaagaaagtaagtcataagaccaagatctg 8989007  T
Q  370 tcatctcaaattccttcatcatttc 394  Q
    |||| |||||  |||||||||||||    
T  8989006 tcatttcaaaagccttcatcatttc 8988982  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 270 - 394
Target Start/End: Complemental strand, 43585991 - 43585867
Alignment:
Q  270 ttcaaaatttcttttgcgtatttcttttgacaaatgaaaatttcatccttgatttgcttgatttccattccaagaaagtaagtcactaatccaagatctg 369  Q
    ||||| ||||||||||| ||||| ||||| |||||||| |  ||||  |   ||||||||||||| || ||||||||||||||||  |  ||||||||||    
T  43585991 ttcaatatttcttttgcatattttttttggcaaatgaacacctcattttcattttgcttgatttcaataccaagaaagtaagtcataagaccaagatctg 43585892  T
Q  370 tcatctcaaattccttcatcatttc 394  Q
    |||| |||||  |||||||||||||    
T  43585891 tcatttcaaaagccttcatcatttc 43585867  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 267 - 415
Target Start/End: Original strand, 30506893 - 30507042
Alignment:
Q  267 tttttcaaaatttcttttgcgtatttcttttgacaaatgaaaatttcatccttga-tttgcttgatttccattccaagaaagtaa-gtcactaatccaag 364  Q
    ||||||| ||||||  |||| |||||||||||||||||||||| |||||| |||| ||||||| || |||||| | |||||  || |||| ||  || ||    
T  30506893 tttttcagaatttcccttgcatatttcttttgacaaatgaaaacttcatc-ttgactttgcttaatctccatttcgagaaaaaaaagtcattagccccag 30506991  T
Q  365 atctgtcatctcaaattccttcatcatttccaatttaaattcatcaatcaa 415  Q
    |||||||||||||||| | ||  |||||||||  || ||||||||||||||    
T  30506992 atctgtcatctcaaatacttttgtcatttccatcttgaattcatcaatcaa 30507042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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