View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1069_low_14 (Length: 425)

Name: NF1069_low_14
Description: NF1069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1069_low_14
NF1069_low_14
[»] chr2 (3 HSPs)
chr2 (104-193)||(31412855-31412944)
chr2 (273-323)||(31413058-31413108)
chr2 (176-214)||(31412953-31412991)
[»] chr1 (1 HSPs)
chr1 (7-43)||(11877910-11877946)
[»] chr8 (1 HSPs)
chr8 (287-323)||(2769786-2769822)


Alignment Details
Target: chr2 (Bit Score: 86; Significance: 6e-41; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 104 - 193
Target Start/End: Original strand, 31412855 - 31412944
Alignment:
Q  104 aggcttcaaactatgcaaacatttctctgttataggctttaaactatgcaatcgtagaagcaaaatgaaaatgggtttggagatggagaa 193  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31412855 aggcttcaaactatgcaaacatttctctgttataggcttcaaactatgcaatcgtagaagcaaaatgaaaatgggtttggagatggagaa 31412944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 273 - 323
Target Start/End: Original strand, 31413058 - 31413108
Alignment:
Q  273 ttttgttttgagaaagatttgatcatgtggagcaagatatcatattggttt 323  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31413058 ttttgttttgagaaagatatgatcatgtggagcaagatatcatattggttt 31413108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 31412953 - 31412991
Alignment:
Q  176 gggtttggagatggagaagaggatgaaggagttatgttt 214  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  31412953 gggtttggagatggagaaagggatgaaggagttatgttt 31412991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 11877910 - 11877946
Alignment:
Q  7 tccaacaatatttcaagataagaaaaactcgaataat 43  Q
    |||||||| ||||||||||||||||||||||||||||    
T  11877910 tccaacaaaatttcaagataagaaaaactcgaataat 11877946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 323
Target Start/End: Complemental strand, 2769822 - 2769786
Alignment:
Q  287 agatttgatcatgtggagcaagatatcatattggttt 323  Q
    |||| |||||||||||||||||||||| |||||||||    
T  2769822 agatatgatcatgtggagcaagatatcttattggttt 2769786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University