View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1069_low_15 (Length: 415)
Name: NF1069_low_15
Description: NF1069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1069_low_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 51 - 415
Target Start/End: Original strand, 42271432 - 42271796
Alignment:
| Q |
51 |
ttgttttgataagaaatgtttgtatattttaattacaactaatttactttcttatgtaaaataatttatagaggtgttggatcaaatggagagttacaca |
150 |
Q |
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| T |
42271432 |
ttgttttgataagaaatgtttgtatattttaattacaactaatttactttcttatgtaaaataatttatagaggtgttgattcaaatggagagttacaca |
42271531 |
T |
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| Q |
151 |
acaaccaagaaattggagagaatttcttggatggactatcatcaaaaaccatgacaaacactatgtttgatgaaccagcttgtgactatttgaagaaact |
250 |
Q |
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| T |
42271532 |
acaaccaagaaattggagagaatttcttggatggactatcatcaaaaaccatgacaaacactatgtttgatgaaccagcttgtgactatttgaagaaact |
42271631 |
T |
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| Q |
251 |
tgatacaacaagttgggaatataatactagtggttcaacttcattcaatactaattttgagaagcacttaaatgggtacagtgaagctcttattgagaat |
350 |
Q |
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| T |
42271632 |
tgatacaacaagttgggaatataatactagtggttcaacttcattcaatactaattttgagaagcacttaaatgggtacagtgaagctcttattgagaat |
42271731 |
T |
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| Q |
351 |
aatgaaaggttgacaaaattatccaatcttgtaagcacttggtctattgccccacctgaccctga |
415 |
Q |
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| T |
42271732 |
aatgaaaggttgacaaaattatccaatcttgtaagcacttggtctattgccccacctgaccctga |
42271796 |
T |
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