View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1069_low_16 (Length: 367)
Name: NF1069_low_16
Description: NF1069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1069_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 268
Target Start/End: Original strand, 29248051 - 29248307
Alignment:
| Q |
12 |
atgaactacttagctttgaaccgattaacctccggtaatttcacttttgaatgtgctaagagctttgagaagaagctattgaagaattgctggaatatgt |
111 |
Q |
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| T |
29248051 |
atgaactacttagctttgaaccgattatcccgcggtaatttcacttttgaatgtgttaagagctttgagaagaagctgttgaagaattgctggaatgtgt |
29248150 |
T |
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| Q |
112 |
tccaactttctttcctcaaacttaaagtgacaaaaacctatctgaattattatgaatcaatgaaagttaatactgatgtgaatcctggcgatgaagaggt |
211 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
29248151 |
tccaactttctttcctcaaacttaaagtgacagaaacctatctgaattattatgaatcaatgaaagttaatactgatgtgaatcctggcgatgaagagat |
29248250 |
T |
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| Q |
212 |
tctggctgatgcagaaccagctgtaacccaggctccgactgatgcagaaccagctgt |
268 |
Q |
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| T |
29248251 |
tccggctgatgcagaaccagctgtaatccagggtctggatgttgcagaacaagctgt |
29248307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 29248251 - 29248307
Alignment:
| Q |
245 |
tccgactgatgcagaaccagctgtaatccagggtctggatgttgcagaacaagctgt |
301 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29248251 |
tccggctgatgcagaaccagctgtaatccagggtctggatgttgcagaacaagctgt |
29248307 |
T |
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