View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1069_low_17 (Length: 338)
Name: NF1069_low_17
Description: NF1069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1069_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 30 - 327
Target Start/End: Complemental strand, 34893535 - 34893237
Alignment:
| Q |
30 |
aataatagtttacaaatcaaattatttgatcatctcagttggccaaccatgcaagtcgctaacacattgatatttttagcgcttggcttcaatatacgtg |
129 |
Q |
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| T |
34893535 |
aataatagtttacaaatcaaattatttgatcatcttagttggccaaccatacaagtcgctaacacattgatatttctagcgcttggcttcaatatatgtg |
34893436 |
T |
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| Q |
130 |
gagcgccnnnnnnnttcaatgtcttagcaagtgtcatcaaagacaggacgagtacgggtcgagatcgagtgattttaagagggaaaaattatcatgactc |
229 |
Q |
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||||||| | |||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34893435 |
gagcgccaaaaatat-caatgtcttagcaagtgtcatcaaagacgggacgagaacggatcgagatcgagtgattttaagagggaaaaattatcataactc |
34893337 |
T |
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| Q |
230 |
tatttgtacct--ctcttattttaataattatttgtctttcaaatttctcttgtgaaaaaacacattaaaatacacaaagtcaccatgtatttatttcat |
327 |
Q |
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||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34893336 |
tatttgtacctccctcttattttaataactatttgtctttcatatttctcttgtgaaaaaacacattaaaatacacaaagtcaccatgcatttatttcat |
34893237 |
T |
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