View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1069_low_24 (Length: 293)

Name: NF1069_low_24
Description: NF1069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1069_low_24
NF1069_low_24
[»] chr8 (15 HSPs)
chr8 (1-225)||(3782975-3783192)
chr8 (224-271)||(5689591-5689637)
chr8 (226-271)||(17982977-17983021)
chr8 (226-271)||(19945158-19945203)
chr8 (226-271)||(44304179-44304224)
chr8 (225-271)||(30143664-30143709)
chr8 (226-271)||(1746018-1746063)
chr8 (226-271)||(6599289-6599333)
chr8 (226-271)||(6674742-6674786)
chr8 (228-271)||(41366420-41366462)
chr8 (226-263)||(2628071-2628108)
chr8 (226-271)||(4731982-4732026)
chr8 (226-271)||(12702431-12702475)
chr8 (226-271)||(31218581-31218625)
chr8 (225-270)||(40321400-40321443)
[»] chr6 (11 HSPs)
chr6 (226-271)||(16452127-16452172)
chr6 (224-271)||(22963506-22963553)
chr6 (224-271)||(23824840-23824887)
chr6 (226-271)||(2171326-2171371)
chr6 (226-271)||(5406002-5406047)
chr6 (226-271)||(5408869-5408914)
chr6 (226-271)||(5410327-5410372)
chr6 (226-271)||(5413194-5413239)
chr6 (226-271)||(26954091-26954135)
chr6 (226-269)||(28137211-28137253)
chr6 (226-271)||(30834333-30834378)
[»] chr4 (12 HSPs)
chr4 (226-271)||(5369881-5369926)
chr4 (226-271)||(29999628-29999673)
chr4 (226-271)||(48143372-48143417)
chr4 (226-271)||(45686987-45687031)
chr4 (226-271)||(48893443-48893487)
chr4 (226-269)||(52095162-52095204)
chr4 (228-271)||(56178438-56178480)
chr4 (225-271)||(36463195-36463240)
chr4 (226-271)||(29254816-29254861)
chr4 (242-271)||(47038231-47038260)
chr4 (226-271)||(52082463-52082507)
chr4 (226-271)||(54199708-54199752)
[»] chr3 (13 HSPs)
chr3 (226-271)||(9635923-9635968)
chr3 (226-270)||(9634621-9634665)
chr3 (226-271)||(19683687-19683732)
chr3 (226-271)||(5236257-5236301)
chr3 (226-271)||(5257943-5257988)
chr3 (226-271)||(9581607-9581652)
chr3 (226-271)||(22834807-22834851)
chr3 (226-271)||(31314764-31314808)
chr3 (226-271)||(40734821-40734865)
chr3 (226-270)||(9666270-9666313)
chr3 (225-271)||(7764789-7764835)
chr3 (242-271)||(44700299-44700328)
chr3 (226-271)||(51399138-51399182)
[»] chr1 (11 HSPs)
chr1 (226-271)||(20762992-20763037)
chr1 (226-271)||(833970-834014)
chr1 (226-271)||(8550584-8550628)
chr1 (226-271)||(37503362-37503406)
chr1 (226-271)||(40122001-40122045)
chr1 (226-260)||(13316151-13316185)
chr1 (225-271)||(28265358-28265403)
chr1 (226-271)||(45644158-45644202)
chr1 (242-271)||(49918674-49918703)
chr1 (226-270)||(1833833-1833876)
chr1 (242-270)||(44455485-44455513)
[»] chr2 (16 HSPs)
chr2 (225-271)||(36205463-36205509)
chr2 (226-271)||(723547-723591)
chr2 (226-271)||(2334218-2334262)
chr2 (226-271)||(24885909-24885953)
chr2 (226-263)||(32289900-32289937)
chr2 (226-271)||(34139573-34139617)
chr2 (226-271)||(36773882-36773926)
chr2 (226-271)||(36987875-36987919)
chr2 (226-271)||(42362669-42362713)
chr2 (225-267)||(4502932-4502973)
chr2 (116-182)||(37961253-37961319)
chr2 (242-271)||(6594819-6594848)
chr2 (242-271)||(14633643-14633672)
chr2 (226-271)||(17057169-17057213)
chr2 (226-271)||(17085152-17085196)
chr2 (226-271)||(33162254-33162298)
[»] chr7 (6 HSPs)
chr7 (226-271)||(29991377-29991422)
chr7 (226-271)||(35854240-35854285)
chr7 (226-271)||(38671025-38671069)
chr7 (226-271)||(41648814-41648858)
chr7 (242-271)||(25616179-25616208)
chr7 (227-271)||(48489755-48489798)
[»] chr5 (9 HSPs)
chr5 (226-271)||(9789021-9789066)
chr5 (226-271)||(30182912-30182957)
chr5 (225-271)||(25413084-25413130)
chr5 (226-263)||(18441441-18441478)
chr5 (226-270)||(5887235-5887278)
chr5 (225-271)||(16649634-16649679)
chr5 (226-260)||(26178221-26178255)
chr5 (226-271)||(31183297-31183341)
chr5 (227-271)||(13240075-13240118)
[»] scaffold1519 (1 HSPs)
scaffold1519 (226-271)||(1240-1285)
[»] scaffold0286 (1 HSPs)
scaffold0286 (226-271)||(11890-11935)
[»] scaffold0002 (1 HSPs)
scaffold0002 (226-271)||(434858-434903)


Alignment Details
Target: chr8 (Bit Score: 171; Significance: 7e-92; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 3783192 - 3782975
Alignment:
Q  1 attagagggacgacgcgtgtgtcattgtgttcagtatgaggagaaggcaagttcggaaagnnnnnnnnnngggtgcaaatttttaacatcttgtgaagaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||    
T  3783192 attagagggacgacgcgtgtgtcattgtgttcagtatgaggagaaggcaagttcggaaa-------aaaagggtgcaaatttttaacatcttgtgaagaa 3783100  T
Q  101 tctgaaataaggaggttgaagtttgctaaggattcagcaacggtgaaggagagaaagtctccattgaggtagcgtatataagagggagcattttcggaat 200  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||    
T  3783099 tctgaaataaggaggttgaagtttgctaaggattcagcaatggtgaaggagagagagtctccattgaggtagcgtatataagggggaacattttcggaat 3783000  T
Q  201 gtgaaggaattataagattggaaga 225  Q
    |||||||||||||||||||||||||    
T  3782999 gtgaaggaattataagattggaaga 3782975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 5689637 - 5689591
Alignment:
Q  224 gatgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5689637 gatgttgtgaattccga-ctcaaaatcacaccaatacaaactatgatg 5689591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 17983021 - 17982977
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  17983021 tgttgtgaattccgatctcaaa-tcacaccaatacaaactatgatg 17982977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 19945158 - 19945203
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||    
T  19945158 tgttgtgaattccggtctcaaaatcacaccaatacaaactttgatg 19945203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 44304224 - 44304179
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||    
T  44304224 tgttgtgaattccgttctcaaaatcacaccaatacatactatgatg 44304179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 271
Target Start/End: Complemental strand, 30143709 - 30143664
Alignment:
Q  225 atgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||    
T  30143709 atgttgtgaattcaga-ctcaaaatcacaccaatacaaactatgatg 30143664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 1746018 - 1746063
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    ||||||||||| || |||||||||||||||||||| ||||||||||    
T  1746018 tgttgtgaatttcggtctcaaaatcacaccaatacgaactatgatg 1746063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 6599333 - 6599289
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  6599333 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 6599289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 6674786 - 6674742
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  6674786 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 6674742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 41366420 - 41366462
Alignment:
Q  228 ttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||| || ||||||||||||||||||||||||||||||    
T  41366420 ttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 41366462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 263
Target Start/End: Complemental strand, 2628108 - 2628071
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaa 263  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  2628108 tgttgtgaattccgatctcgaaaccacaccaatacaaa 2628071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 4732026 - 4731982
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||| || ||||||||||||||||||||||| ||||||    
T  4732026 tgttgtgaattc-gaactcaaaatcacaccaatacaaacaatgatg 4731982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 12702431 - 12702475
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||| || |||||||||||| |||||||||||||||||    
T  12702431 tgttgtgaattcgga-ctcaaaatcacatcaatacaaactatgatg 12702475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 31218625 - 31218581
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||||| ||||||| ||||||||||| |||||||||||    
T  31218625 tgttgtgaattccggtctcaaa-tcacaccaatataaactatgatg 31218581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 40321443 - 40321400
Alignment:
Q  225 atgttgtgaattccgatctcaaaatcacaccaatacaaactatgat 270  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||    
T  40321443 atgttgtgaattccga-ctcaaaatcacac-aatacaaactatgat 40321400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 16452127 - 16452172
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  16452127 tgttgtgaattccgatctcaaaatcacaccaatacgaactatgatg 16452172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 22963506 - 22963553
Alignment:
Q  224 gatgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||||||   ||||||||||||||||||||||||||||||    
T  22963506 gatgttgtgaattccagactcaaaatcacaccaatacaaactatgatg 22963553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 23824887 - 23824840
Alignment:
Q  224 gatgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||||||   ||||||||||||||||||||||||||||||    
T  23824887 gatgttgtgaattccagactcaaaatcacaccaatacaaactatgatg 23824840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 2171326 - 2171371
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||||| ||||||| |||||||||||| ||||||||||    
T  2171326 tgttgtgaattccggtctcaaagtcacaccaatacgaactatgatg 2171371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 5406002 - 5406047
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||||| ||| ||| |||||||||||||||||||||||    
T  5406002 tgttgtgaattccggtcttaaagtcacaccaatacaaactatgatg 5406047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 5408869 - 5408914
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||||  ||||||| |||||||||||||||||||||||    
T  5408869 tgttgtgaattccagtctcaaagtcacaccaatacaaactatgatg 5408914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 5410327 - 5410372
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||||| ||| ||| |||||||||||||||||||||||    
T  5410327 tgttgtgaattccggtcttaaagtcacaccaatacaaactatgatg 5410372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 5413194 - 5413239
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||||  ||||||| |||||||||||||||||||||||    
T  5413194 tgttgtgaattccagtctcaaagtcacaccaatacaaactatgatg 5413239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 26954091 - 26954135
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  26954091 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 26954135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 269
Target Start/End: Original strand, 28137211 - 28137253
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatga 269  Q
    |||||||||||| | |||||||||||||||||||||||||||||    
T  28137211 tgttgtgaattcgg-tctcaaaatcacaccaatacaaactatga 28137253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 30834333 - 30834378
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    ||||||||||| || |||||||||||||||||||| || |||||||    
T  30834333 tgttgtgaatttcggtctcaaaatcacaccaatacgaaatatgatg 30834378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 5369881 - 5369926
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  5369881 tgttgtgaattccggtctcaaaatcacaccaatacaaactatgatg 5369926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 29999628 - 29999673
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  29999628 tgttgtgaattccggtctcaaaatcacaccaatacaaactatgatg 29999673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 48143417 - 48143372
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||    
T  48143417 tgttgtgaattccggactcaaaatcacaccaatacaaactatgatg 48143372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 45686987 - 45687031
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  45686987 tgttgtgaattcaga-ctcaaaatcacaccaatacaaactatgatg 45687031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 48893443 - 48893487
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  48893443 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 48893487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 269
Target Start/End: Original strand, 52095162 - 52095204
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatga 269  Q
    |||||||||||| || ||||||||||||||||||||||||||||    
T  52095162 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatga 52095204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 56178438 - 56178480
Alignment:
Q  228 ttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||| || ||||||||||||||||||||||||||||||    
T  56178438 ttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 56178480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 271
Target Start/End: Original strand, 36463195 - 36463240
Alignment:
Q  225 atgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    ||||||||||||| || ||||||||||||| ||||||||||||||||    
T  36463195 atgttgtgaattcgga-ctcaaaatcacactaatacaaactatgatg 36463240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 29254861 - 29254816
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||| || || |||||||||| ||||||||||||||||    
T  29254861 tgttgtgaattcggaacttaaaatcacactaatacaaactatgatg 29254816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 271
Target Start/End: Original strand, 47038231 - 47038260
Alignment:
Q  242 ctcaaaatcacaccaatacaaactatgatg 271  Q
    ||||||||||||||||||||||||||||||    
T  47038231 ctcaaaatcacaccaatacaaactatgatg 47038260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 52082463 - 52082507
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||| || |||||||||||||||||||||| |||||||    
T  52082463 tgttgtgaattcgga-ctcaaaatcacaccaatacaaattatgatg 52082507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 54199708 - 54199752
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||| || ||||||||||||||||||||||| ||||||    
T  54199708 tgttgtgaattcgga-ctcaaaatcacaccaatacaaacgatgatg 54199752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 9635923 - 9635968
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  9635923 tgttgtgaattccggtctcaaaatcacaccaatacaaactatgatg 9635968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 9634621 - 9634665
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgat 270  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  9634621 tgttgtgaattccggtctcaaaatcacaccaatacaaactatgat 9634665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 19683687 - 19683732
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||    
T  19683687 tgttgtgaattccggtctcaaactcacaccaatacaaactatgatg 19683732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 5236257 - 5236301
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  5236257 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 5236301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 5257943 - 5257988
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||||| ||||||| |||||||||||| ||||||||||    
T  5257943 tgttgtgaattccggtctcaaagtcacaccaatacgaactatgatg 5257988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 9581652 - 9581607
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    ||||||||||||||  |||||||||||||||||| |||||||||||    
T  9581652 tgttgtgaattccggactcaaaatcacaccaatataaactatgatg 9581607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 22834807 - 22834851
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  22834807 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 22834851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 31314808 - 31314764
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||    
T  31314808 tgttgtgaataccga-ctcaaaatcacaccaatacaaactatgatg 31314764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 40734865 - 40734821
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||| | |||||||||||||||||||||||||||||||    
T  40734865 tgttgtgaattcgg-tctcaaaatcacaccaatacaaactatgatg 40734821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 9666270 - 9666313
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgat 270  Q
    |||||||||||| || |||||||||||||||||||||||||||||    
T  9666270 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgat 9666313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 271
Target Start/End: Complemental strand, 7764835 - 7764789
Alignment:
Q  225 atgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||||||  |||||||  |||||||||||||||||||||    
T  7764835 atgttgtgaattccggactcaaaactacaccaatacaaactatgatg 7764789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 271
Target Start/End: Original strand, 44700299 - 44700328
Alignment:
Q  242 ctcaaaatcacaccaatacaaactatgatg 271  Q
    ||||||||||||||||||||||||||||||    
T  44700299 ctcaaaatcacaccaatacaaactatgatg 44700328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 51399182 - 51399138
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||| || |||||||||| |||||||||||||||||||    
T  51399182 tgttgtgaattcgga-ctcaaaatcataccaatacaaactatgatg 51399138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 20763037 - 20762992
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  20763037 tgttgtgaattccggtctcaaaatcacaccaatacaaactatgatg 20762992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 833970 - 834014
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  833970 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 834014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 8550584 - 8550628
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  8550584 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 8550628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 37503362 - 37503406
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  37503362 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 37503406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 40122001 - 40122045
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  40122001 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 40122045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 260
Target Start/End: Original strand, 13316151 - 13316185
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatac 260  Q
    |||||||||||||| ||||||||||||||||||||    
T  13316151 tgttgtgaattccggtctcaaaatcacaccaatac 13316185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 271
Target Start/End: Original strand, 28265358 - 28265403
Alignment:
Q  225 atgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||| |||||| || ||||||||||||||||||||||||||||||    
T  28265358 atgttgggaattcgga-ctcaaaatcacaccaatacaaactatgatg 28265403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 45644158 - 45644202
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||| || ||||||||||||| ||||||||||||||||    
T  45644158 tgttgtgaattcgga-ctcaaaatcacacaaatacaaactatgatg 45644202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 271
Target Start/End: Complemental strand, 49918703 - 49918674
Alignment:
Q  242 ctcaaaatcacaccaatacaaactatgatg 271  Q
    ||||||||||||||||||||||||||||||    
T  49918703 ctcaaaatcacaccaatacaaactatgatg 49918674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 270
Target Start/End: Complemental strand, 1833876 - 1833833
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgat 270  Q
    |||||||||||| || ||||| |||||||||||||||||||||||    
T  1833876 tgttgtgaattcgga-ctcaatatcacaccaatacaaactatgat 1833833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 44455513 - 44455485
Alignment:
Q  242 ctcaaaatcacaccaatacaaactatgat 270  Q
    |||||||||||||||||||||||||||||    
T  44455513 ctcaaaatcacaccaatacaaactatgat 44455485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 225 - 271
Target Start/End: Original strand, 36205463 - 36205509
Alignment:
Q  225 atgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||    
T  36205463 atgttgtgaattccggtctcaaaatcacactaatacaaactatgatg 36205509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 723547 - 723591
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  723547 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 723591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 2334218 - 2334262
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  2334218 tgttgtgaattcaga-ctcaaaatcacaccaatacaaactatgatg 2334262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 24885953 - 24885909
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  24885953 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 24885909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 263
Target Start/End: Complemental strand, 32289937 - 32289900
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaa 263  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  32289937 tgttgtgaattccgatctcaaaaccacaccaatacaaa 32289900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 34139573 - 34139617
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  34139573 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 34139617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 36773926 - 36773882
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||    
T  36773926 tgttgtgaattcggat-tcaaaatcacaccaatacaaactatgatg 36773882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 36987875 - 36987919
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  36987875 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 36987919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 42362713 - 42362669
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  42362713 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 42362669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 267
Target Start/End: Original strand, 4502932 - 4502973
Alignment:
Q  225 atgttgtgaattccgatctcaaaatcacaccaatacaaactat 267  Q
    ||||||||||||||| ||||||| |||||||||||||||||||    
T  4502932 atgttgtgaattccggtctcaaa-tcacaccaatacaaactat 4502973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 182
Target Start/End: Original strand, 37961253 - 37961319
Alignment:
Q  116 ttgaagtttgctaaggattcagcaacggtgaaggagagaaagtctccattgaggtagcgtatataag 182  Q
    ||||||| |||| |||||||||| ||||||||||||| | ||||| ||| |||||| ||||| ||||    
T  37961253 ttgaagtctgctgaggattcagctacggtgaaggagatagagtcttcatcgaggtaacgtatgtaag 37961319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 271
Target Start/End: Original strand, 6594819 - 6594848
Alignment:
Q  242 ctcaaaatcacaccaatacaaactatgatg 271  Q
    ||||||||||||||||||||||||||||||    
T  6594819 ctcaaaatcacaccaatacaaactatgatg 6594848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 271
Target Start/End: Original strand, 14633643 - 14633672
Alignment:
Q  242 ctcaaaatcacaccaatacaaactatgatg 271  Q
    ||||||||||||||||||||||||||||||    
T  14633643 ctcaaaatcacaccaatacaaactatgatg 14633672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 17057169 - 17057213
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||| || |||||||||||||||||||||| |||||||    
T  17057169 tgttgtgaattcgga-ctcaaaatcacaccaatacaaaatatgatg 17057213  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 17085152 - 17085196
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||| || |||||||||||||||||||||| |||||||    
T  17085152 tgttgtgaattcgga-ctcaaaatcacaccaatacaaaatatgatg 17085196  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 33162254 - 33162298
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||| || |||||||||||| |||||||||||||||||    
T  33162254 tgttgtgaattcgga-ctcaaaatcacatcaatacaaactatgatg 33162298  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 29991422 - 29991377
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||    
T  29991422 tgttgtgaattccgttctcaaagtcacaccaatacaaactatgatg 29991377  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 35854285 - 35854240
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||||  |||||||||||||| ||||||||||||||||    
T  35854285 tgttgtgaattccagtctcaaaatcacacaaatacaaactatgatg 35854240  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 38671025 - 38671069
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  38671025 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 38671069  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 41648814 - 41648858
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  41648814 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 41648858  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 271
Target Start/End: Complemental strand, 25616208 - 25616179
Alignment:
Q  242 ctcaaaatcacaccaatacaaactatgatg 271  Q
    ||||||||||||||||||||||||||||||    
T  25616208 ctcaaaatcacaccaatacaaactatgatg 25616179  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 48489798 - 48489755
Alignment:
Q  227 gttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    ||||||||||| || ||||||||||||||||||| ||||||||||    
T  48489798 gttgtgaattcgga-ctcaaaatcacaccaataccaactatgatg 48489755  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 9789021 - 9789066
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||    
T  9789021 tgttgtgaattccgatctcaaaaccacaccaatacaaagtatgatg 9789066  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 30182957 - 30182912
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||    
T  30182957 tgttgtgaattccggtctcaaaatcacaccaaaacaaactatgatg 30182912  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 271
Target Start/End: Complemental strand, 25413130 - 25413084
Alignment:
Q  225 atgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    ||||||||||||||| | |||||||||||||||||| ||||||||||    
T  25413130 atgttgtgaattccggtttcaaaatcacaccaatacgaactatgatg 25413084  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 18441441 - 18441478
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaa 263  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  18441441 tgttgtgaattccgatctcaaaaccacaccaatacaaa 18441478  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 5887235 - 5887278
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgat 270  Q
    |||||||||||| || |||||||||||||||||||||||||||||    
T  5887235 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgat 5887278  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 271
Target Start/End: Original strand, 16649634 - 16649679
Alignment:
Q  225 atgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    ||||||||||||| || |||||||||| |||||||||||||||||||    
T  16649634 atgttgtgaattc-gaactcaaaatcataccaatacaaactatgatg 16649679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 260
Target Start/End: Complemental strand, 26178255 - 26178221
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatac 260  Q
    ||||||||||||||||||||||| |||||||||||    
T  26178255 tgttgtgaattccgatctcaaaaccacaccaatac 26178221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 31183341 - 31183297
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||| || ||||||||||||||||||||||| ||||||    
T  31183341 tgttgtgaattcgga-ctcaaaatcacaccaatacaaaccatgatg 31183297  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 13240118 - 13240075
Alignment:
Q  227 gttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    ||||||||||| || ||||||||||||| ||||||||||||||||    
T  13240118 gttgtgaattc-gaactcaaaatcacactaatacaaactatgatg 13240075  T

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Target: scaffold1519 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1519
Description:

Target: scaffold1519; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 1285 - 1240
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||||| ||||||| |||||||||||| ||||||||||    
T  1285 tgttgtgaattccggtctcaaagtcacaccaatacgaactatgatg 1240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 11935 - 11890
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||||| ||||||| |||||||||||| ||||||||||    
T  11935 tgttgtgaattccggtctcaaagtcacaccaatacgaactatgatg 11890  T

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Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 434903 - 434858
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaactatgatg 271  Q
    |||||||||||||| ||||||| |||||||||||| ||||||||||    
T  434903 tgttgtgaattccgttctcaaagtcacaccaatacgaactatgatg 434858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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