View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1069_low_25 (Length: 288)
Name: NF1069_low_25
Description: NF1069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1069_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 40565874 - 40566069
Alignment:
| Q |
1 |
ataaatgttagacaaaaccgtgtttaatttgatcattccattccatacaggaaaattcaatcattttgacttttctattattaaggttacaaggagaata |
100 |
Q |
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| T |
40565874 |
ataaatgttagacaaaaccgtgtttaatttgatcattccattccatacaggaaaattcaatcattttgacttttctattattaaggttacaaggagaata |
40565973 |
T |
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| Q |
101 |
aataaatactaaacaaaatctaaggatttgtataccgatgaacctgnnnnnnntagcaaagccatggctgtgcactcaaaacaattgctgctgatg |
196 |
Q |
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| T |
40565974 |
aataaatactaaacaaaatctaaggatttgtataccgatgaacctgaaaaaaatagcaaagccatggctgtgcactcaaaacaattgctgctgatg |
40566069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 40595253 - 40595321
Alignment:
| Q |
8 |
ttagacaaaaccgtgtttaatttgatcattccattccatacaggaaaattcaatcattttgacttttct |
76 |
Q |
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| T |
40595253 |
ttagacaaaaccatgtttaatttcatcattccaatctgtacaacaaaaatcattcattttgacttttct |
40595321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 8490318 - 8490376
Alignment:
| Q |
24 |
ttaatttgatcattccattccatacaggaaaattcaatcattttgacttttctattattaa |
84 |
Q |
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| T |
8490318 |
ttaatttgatcattcaattccata--ggaaaaatcagtcattttgacttttctatttttaa |
8490376 |
T |
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