View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1069_low_26 (Length: 287)

Name: NF1069_low_26
Description: NF1069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1069_low_26
NF1069_low_26
[»] chr5 (8 HSPs)
chr5 (43-175)||(27170054-27170186)
chr5 (43-172)||(7766973-7767102)
chr5 (43-175)||(18696958-18697090)
chr5 (43-83)||(6030388-6030428)
chr5 (46-93)||(41355570-41355617)
chr5 (137-175)||(7271893-7271931)
chr5 (43-76)||(7271859-7271892)
chr5 (48-81)||(38958230-38958263)
[»] chr2 (9 HSPs)
chr2 (43-175)||(17375302-17375434)
chr2 (53-175)||(17281909-17282031)
chr2 (46-175)||(1551563-1551692)
chr2 (46-175)||(1895438-1895567)
chr2 (43-83)||(34660311-34660351)
chr2 (46-123)||(3921620-3921697)
chr2 (191-223)||(7432646-7432678)
chr2 (133-175)||(3921684-3921726)
chr2 (115-172)||(38531168-38531225)
[»] chr8 (3 HSPs)
chr8 (43-175)||(10408850-10408982)
chr8 (43-172)||(5994655-5994783)
chr8 (46-172)||(6444063-6444189)
[»] chr1 (8 HSPs)
chr1 (44-175)||(34117998-34118129)
chr1 (43-174)||(11407951-11408082)
chr1 (43-123)||(39709015-39709095)
chr1 (43-121)||(26236671-26236749)
chr1 (43-123)||(34655003-34655083)
chr1 (133-175)||(34655070-34655112)
chr1 (132-175)||(39708986-39709029)
chr1 (43-83)||(615786-615826)
[»] chr6 (2 HSPs)
chr6 (43-171)||(21881492-21881620)
chr6 (53-175)||(20740613-20740735)
[»] chr4 (9 HSPs)
chr4 (46-175)||(47518416-47518545)
chr4 (46-175)||(53202294-53202423)
chr4 (43-175)||(23054199-23054330)
chr4 (43-172)||(6410016-6410145)
chr4 (114-170)||(12485357-12485413)
chr4 (111-174)||(24957572-24957635)
chr4 (46-96)||(34227062-34227112)
chr4 (126-169)||(55728934-55728977)
chr4 (114-170)||(12469233-12469289)
[»] chr7 (1 HSPs)
chr7 (43-175)||(3302600-3302732)
[»] scaffold0157 (1 HSPs)
scaffold0157 (114-170)||(35064-35120)
[»] chr3 (2 HSPs)
chr3 (43-83)||(18269763-18269803)
chr3 (43-90)||(43276004-43276051)


Alignment Details
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 43 - 175
Target Start/End: Complemental strand, 27170186 - 27170054
Alignment:
Q  43 agcaccacagaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcaccaccatcgtgaccgatccatcac 142  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27170186 agcaccacaaaccaacacaaccaaagatccatcgaaaccataacagttcgtaagtaaagccaaatatgatccattaccaccatcgtgaccgatccatcac 27170087  T
Q  143 cacttacgttgcgagcaaacataacctccacca 175  Q
    |||||||||||||||||||||||||||||||||    
T  27170086 cacttacgttgcgagcaaacataacctccacca 27170054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 43 - 172
Target Start/End: Complemental strand, 7767102 - 7766973
Alignment:
Q  43 agcaccacagaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcaccaccatcgtgaccgatccatcac 142  Q
    ||||||||| ||||||||||||||||||||||||||||||||| | ||||||||| || | | |||||||||||||||||||| ||| |||||| |||||    
T  7767102 agcaccacaaaccaacacaaccaaagatccatcgaaaccataacaattcataagtgaacctagatatgatccatcaccaccattgtggccgatcaatcac 7767003  T
Q  143 cacttacgttgcgagcaaacataacctcca 172  Q
    ||| || |||||||||||||||||||||||    
T  7767002 cacctatgttgcgagcaaacataacctcca 7766973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 43 - 175
Target Start/End: Original strand, 18696958 - 18697090
Alignment:
Q  43 agcaccacagaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcaccaccatcgtgaccgatccatcac 142  Q
    ||||||||| ||||||||||||||||||||| |||| |||||| ||||||||||  || | | |||||||||||||||||||||||||| ||||||||||    
T  18696958 agcaccacaaaccaacacaaccaaagatccaccgaacccataacagttcataagcgaacctagatatgatccatcaccaccatcgtgactgatccatcac 18697057  T
Q  143 cacttacgttgcgagcaaacataacctccacca 175  Q
    ||| || |||||| |||||||||||||||||||    
T  18697058 cacctatgttgcgggcaaacataacctccacca 18697090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 6030428 - 6030388
Alignment:
Q  43 agcaccacagaccaacacaaccaaagatccatcgaaaccat 83  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  6030428 agcaccacaaaccaacacaaccaaagatccatcgaaaccat 6030388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 93
Target Start/End: Complemental strand, 41355617 - 41355570
Alignment:
Q  46 accacagaccaacacaaccaaagatccatcgaaaccataatagttcat 93  Q
    |||||| ||||||||||||||||||||||||||||||||  |||||||    
T  41355617 accacaaaccaacacaaccaaagatccatcgaaaccatataagttcat 41355570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 7271893 - 7271931
Alignment:
Q  137 catcaccacttacgttgcgagcaaacataacctccacca 175  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  7271893 catcaccacctatgttgcgagcaaacataacctccacca 7271931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 7271859 - 7271892
Alignment:
Q  43 agcaccacagaccaacacaaccaaagatccatcg 76  Q
    ||||||||| ||||||||||||||||||||||||    
T  7271859 agcaccacaaaccaacacaaccaaagatccatcg 7271892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 38958263 - 38958230
Alignment:
Q  48 cacagaccaacacaaccaaagatccatcgaaacc 81  Q
    |||| |||||||||||||||||||||||||||||    
T  38958263 cacaaaccaacacaaccaaagatccatcgaaacc 38958230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 43 - 175
Target Start/End: Original strand, 17375302 - 17375434
Alignment:
Q  43 agcaccacagaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcaccaccatcgtgaccgatccatcac 142  Q
    ||||||||| |||||||||||||||||| |||||||||||||| ||||||||||  || | | ||||||||||||||||||||||||| |||||||||||    
T  17375302 agcaccacaaaccaacacaaccaaagattcatcgaaaccataacagttcataagcgaacctagatatgatccatcaccaccatcgtgatcgatccatcac 17375401  T
Q  143 cacttacgttgcgagcaaacataacctccacca 175  Q
    ||| || |||| |||||||||||||||||||||    
T  17375402 cacctatgttgtgagcaaacataacctccacca 17375434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 53 - 175
Target Start/End: Complemental strand, 17282031 - 17281909
Alignment:
Q  53 accaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcaccaccatcgtgaccgatccatcaccacttacgtt 152  Q
    ||||||||||||||||||||||||||||||||  |||||||||| ||| | | |||||||||||||||||||| ||||| ||||||||||||| || |||    
T  17282031 accaacacaaccaaagatccatcgaaaccatataagttcataagcaaacctagatatgatccatcaccaccattgtgactgatccatcaccacctatgtt 17281932  T
Q  153 gcgagcaaacataacctccacca 175  Q
    |||||||||||||||||||||||    
T  17281931 gcgagcaaacataacctccacca 17281909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 46 - 175
Target Start/End: Complemental strand, 1551692 - 1551563
Alignment:
Q  46 accacagaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcaccaccatcgtgaccgatccatcaccac 145  Q
    |||||| |||||||||||||||||||||||||||| |||  ||||||||||  || | | | |||||||||||||||||||||||| |||||||||||||    
T  1551692 accacaaaccaacacaaccaaagatccatcgaaactatataagttcataagcgaacctatacatgatccatcaccaccatcgtgactgatccatcaccac 1551593  T
Q  146 ttacgttgcgagcaaacataacctccacca 175  Q
     || |||||||||||||||||| |||||||    
T  1551592 ctatgttgcgagcaaacataacatccacca 1551563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 46 - 175
Target Start/End: Original strand, 1895438 - 1895567
Alignment:
Q  46 accacagaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcaccaccatcgtgaccgatccatcaccac 145  Q
    |||||| ||||||||||||||||||||||||||||||||  ||||||||||  || | | ||||||  ||||||||||||| ||||||||| ||||||||    
T  1895438 accacaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgactcatcaccaccatcatgaccgatcaatcaccac 1895537  T
Q  146 ttacgttgcgagcaaacataacctccacca 175  Q
     || |||||||||| |||||||||||||||    
T  1895538 ctatgttgcgagcagacataacctccacca 1895567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 34660311 - 34660351
Alignment:
Q  43 agcaccacagaccaacacaaccaaagatccatcgaaaccat 83  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  34660311 agcaccacaaaccaacacaaccaaagatccatcgaaaccat 34660351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 3921620 - 3921697
Alignment:
Q  46 accacagaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcaccacc 123  Q
    |||||| ||||||||||||||| ||||||| ||||||||  ||||||||||  ||   | ||||||||||||||||||    
T  3921620 accacaaaccaacacaaccaaacatccatcaaaaccatataagttcataagcgaacttagatatgatccatcaccacc 3921697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 7432646 - 7432678
Alignment:
Q  191 atcaatcattcgtttatcaattaaatatactaa 223  Q
    |||||||||||||||||||||||||||||||||    
T  7432646 atcaatcattcgtttatcaattaaatatactaa 7432678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 175
Target Start/End: Original strand, 3921684 - 3921726
Alignment:
Q  133 gatccatcaccacttacgttgcgagcaaacataacctccacca 175  Q
    ||||||||||||| || |||||||||||||||||| |||||||    
T  3921684 gatccatcaccacctatgttgcgagcaaacataacatccacca 3921726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 38531225 - 38531168
Alignment:
Q  115 atcaccaccatcgtgaccgatccatcaccacttacgttgcgagcaaacataacctcca 172  Q
    ||||||||  |||| |||||||||||||||| || ||||||| |||||| ||||||||    
T  38531225 atcaccactttcgtaaccgatccatcaccacatatgttgcgaacaaacaaaacctcca 38531168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 43 - 175
Target Start/End: Original strand, 10408850 - 10408982
Alignment:
Q  43 agcaccacagaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcaccaccatcgtgaccgatccatcac 142  Q
    ||||||||| |||||||||||||||||| |||||||||||||| |  |||||||  || | | |||||||||||||||||||||||||||| ||||||||    
T  10408850 agcaccacaaaccaacacaaccaaagattcatcgaaaccataacatatcataagcgaacctagatatgatccatcaccaccatcgtgaccgttccatcac 10408949  T
Q  143 cacttacgttgcgagcaaacataacctccacca 175  Q
    ||| || ||||||||||||||||||||||||||    
T  10408950 cacctatgttgcgagcaaacataacctccacca 10408982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 43 - 172
Target Start/End: Original strand, 5994655 - 5994783
Alignment:
Q  43 agcaccacagaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcaccaccatcgtgaccgatccatcac 142  Q
    ||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||  || ||| ||||||||||||||||||||| ||| |||||||| |     
T  5994655 agcaccacaaaccaacacaaccaaagatccatcaaaaccataacagttcataagcgaacccagatatgatccatcaccaccatcatgatcgatccattag 5994754  T
Q  143 cacttacgttgcgagcaaacataacctcca 172  Q
    ||| || |||||||||||||||||| ||||    
T  5994755 cac-tatgttgcgagcaaacataacatcca 5994783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 46 - 172
Target Start/End: Original strand, 6444063 - 6444189
Alignment:
Q  46 accacagaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcaccaccatcgtgaccgatccatcaccac 145  Q
    |||||| |||||||||| ||||||| | |||||||||||| || ||||| |  ||  || || ||||||||||||||| | |||||| |||||| |||||    
T  6444063 accacaaaccaacacaatcaaagattcttcgaaaccataacagctcataggcgaactcatatctgatccatcaccacctttgtgaccaatccataaccac 6444162  T
Q  146 ttacgttgcgagcaaacataacctcca 172  Q
     || |||||||||||||||||||||||    
T  6444163 ctaagttgcgagcaaacataacctcca 6444189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 44 - 175
Target Start/End: Original strand, 34117998 - 34118129
Alignment:
Q  44 gcaccacagaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcaccaccatcgtgaccgatccatcacc 143  Q
    |||||||| | |||||||||||||||||||  |||||||||| ||||||||||  || | | ||||||||||||||||||||||||||||||||||||||    
T  34117998 gcaccacaaatcaacacaaccaaagatccactgaaaccataacagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatccatcacc 34118097  T
Q  144 acttacgttgcgagcaaacataacctccacca 175  Q
    || || ||||||||||||||||||||| ||||    
T  34118098 acctatgttgcgagcaaacataacctctacca 34118129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 43 - 174
Target Start/End: Complemental strand, 11408082 - 11407951
Alignment:
Q  43 agcaccacagaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcaccaccatcgtgaccgatccatcac 142  Q
    ||||||||| ||||||||||||||||||   |||||||||||| |  |||||||  || ||| || ||||||||||||||| ||||| ||||||||||||    
T  11408082 agcaccacaaaccaacacaaccaaagatttgtcgaaaccataacatatcataagctaacccatatctgatccatcaccaccttcgtggccgatccatcac 11407983  T
Q  143 cacttacgttgcgagcaaacataacctccacc 174  Q
    |||||| |||||||||||||||||||||||||    
T  11407982 cacttatgttgcgagcaaacataacctccacc 11407951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 39709095 - 39709015
Alignment:
Q  43 agcaccacagaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcaccacc 123  Q
    ||||||||| ||||||||||||||||||||||| ||||||||| ||||| ||||  || ||| ||| ||||||||||||||    
T  39709095 agcaccacaaaccaacacaaccaaagatccatcaaaaccataacagttcctaagcgaacccagatacgatccatcaccacc 39709015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 121
Target Start/End: Complemental strand, 26236749 - 26236671
Alignment:
Q  43 agcaccacagaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcacca 121  Q
    ||||||||| |||||| ||||||||||||||||||| |||||| || |||||||| || ||| || |||||||||||||    
T  26236749 agcaccacaaaccaacgcaaccaaagatccatcgaacccataacaggtcataagtgaacccagatctgatccatcacca 26236671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 34655003 - 34655083
Alignment:
Q  43 agcaccacagaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcaccacc 123  Q
    ||||||||| |||||||||| ||||||| |||| ||||||||| | ||||||||  || | | ||||||||||||||||||    
T  34655003 agcaccacaaaccaacacaatcaaagatgcatcaaaaccataacatttcataagcgaacctagatatgatccatcaccacc 34655083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 175
Target Start/End: Original strand, 34655070 - 34655112
Alignment:
Q  133 gatccatcaccacttacgttgcgagcaaacataacctccacca 175  Q
    ||||||||||||| || ||||||||||||||||||||||||||    
T  34655070 gatccatcaccacctatgttgcgagcaaacataacctccacca 34655112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 175
Target Start/End: Complemental strand, 39709029 - 39708986
Alignment:
Q  132 cgatccatcaccacttacgttgcgagcaaacataacctccacca 175  Q
    |||||||||||||| ||  |||||||||||||||||||||||||    
T  39709029 cgatccatcaccacctatattgcgagcaaacataacctccacca 39708986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 615786 - 615826
Alignment:
Q  43 agcaccacagaccaacacaaccaaagatccatcgaaaccat 83  Q
    ||||||||| || |||||||||||||||||||| |||||||    
T  615786 agcaccacaaactaacacaaccaaagatccatcaaaaccat 615826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 43 - 171
Target Start/End: Original strand, 21881492 - 21881620
Alignment:
Q  43 agcaccacagaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcaccaccatcgtgaccgatccatcac 142  Q
    ||||||||| ||||||| |||||||||| |||||||||||||  ||||||||||  || | | |||||||||||||||||||||||||||||||||||||    
T  21881492 agcaccacaaaccaacataaccaaagattcatcgaaaccatagcagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatccatcac 21881591  T
Q  143 cacttacgttgcgagcaaacataacctcc 171  Q
    ||| |  ||||||||||||||||||||||    
T  21881592 cacctttgttgcgagcaaacataacctcc 21881620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 175
Target Start/End: Original strand, 20740613 - 20740735
Alignment:
Q  53 accaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcaccaccatcgtgaccgatccatcaccacttacgtt 152  Q
    ||||||||||||||||||||||||||||||||  |||||||||   || | | ||||||||||||||||||||||||||| |||||||||||| || |||    
T  20740613 accaacacaaccaaagatccatcgaaaccatataagttcataaccgaacctagatatgatccatcaccaccatcgtgaccaatccatcaccacctatgtt 20740712  T
Q  153 gcgagcaaacataacctccacca 175  Q
    ||||||||||||||| |||||||    
T  20740713 gcgagcaaacataacatccacca 20740735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 46 - 175
Target Start/End: Complemental strand, 47518545 - 47518416
Alignment:
Q  46 accacagaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcaccaccatcgtgaccgatccatcaccac 145  Q
    |||||| || |||||||||||||||||||||||||||||  ||||||||||  || | | ||||||| |||||||||||| ||||| |||||||||||||    
T  47518545 accacaaacgaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgattcatcaccaccattgtgactgatccatcaccac 47518446  T
Q  146 ttacgttgcgagcaaacataacctccacca 175  Q
     || ||||||||||||||||||||||||||    
T  47518445 ctatgttgcgagcaaacataacctccacca 47518416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 46 - 175
Target Start/End: Original strand, 53202294 - 53202423
Alignment:
Q  46 accacagaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcaccaccatcgtgaccgatccatcaccac 145  Q
    |||||| ||||| ||||||||||||||||||||||||||  ||||||||||  || | | ||||||| |||||||||||||||||||||||  |||||||    
T  53202294 accacaaaccaatacaaccaaagatccatcgaaaccatataagttcataagcgaatctagatatgattcatcaccaccatcgtgaccgatctgtcaccac 53202393  T
Q  146 ttacgttgcgagcaaacataacctccacca 175  Q
     || ||||||||||||||||||||||||||    
T  53202394 ctatgttgcgagcaaacataacctccacca 53202423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 43 - 175
Target Start/End: Complemental strand, 23054330 - 23054199
Alignment:
Q  43 agcaccacagaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcaccaccatcgtgaccgatccatcac 142  Q
    ||||||||  |||||||||||||||||||||| |||||||||| ||||||||||  || | | |||||||||| ||| ||||||||||| ||||||||||    
T  23054330 agcaccacgaaccaacacaaccaaagatccattgaaaccataacagttcataagcgaaccgagatatgatccagcac-accatcgtgactgatccatcac 23054232  T
Q  143 cacttacgttgcgagcaaacataacctccacca 175  Q
    ||| || ||||||||||||||||||||||||||    
T  23054231 cacctatgttgcgagcaaacataacctccacca 23054199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 43 - 172
Target Start/End: Original strand, 6410016 - 6410145
Alignment:
Q  43 agcaccacagaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcaccaccatcgtgaccgatccatcac 142  Q
    ||||||||| |||||||||||| ||||| ||||||||||||||||| |||||||  ||  || || ||||| ||| ||||| ||||||||||||||||||    
T  6410016 agcaccacaaaccaacacaacccaagattcatcgaaaccataatagatcataagcgaactcagatctgatcgatcgccaccttcgtgaccgatccatcac 6410115  T
Q  143 cacttacgttgcgagcaaacataacctcca 172  Q
    ||| ||  ||||||||||||||||||||||    
T  6410116 cacctattttgcgagcaaacataacctcca 6410145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 170
Target Start/End: Complemental strand, 12485413 - 12485357
Alignment:
Q  114 catcaccaccatcgtgaccgatccatcaccacttacgttgcgagcaaacataacctc 170  Q
    |||||||||||||||||| | |||||||||||| |||||||||| ||||||||||||    
T  12485413 catcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctc 12485357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 24957635 - 24957572
Alignment:
Q  111 atccatcaccaccatcgtgaccgatccatcaccacttacgttgcgagcaaacataacctccacc 174  Q
    |||||||  |||| ||||||||||| ||||||||| || |||||||||||||||||||||||||    
T  24957635 atccatcgtcaccttcgtgaccgatacatcaccacctatgttgcgagcaaacataacctccacc 24957572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 34227112 - 34227062
Alignment:
Q  46 accacagaccaacacaaccaaagatccatcgaaaccataatagttcataag 96  Q
    ||||||||||||||||||||||||||||| |||||||||  ||||||||||    
T  34227112 accacagaccaacacaaccaaagatccattgaaaccatataagttcataag 34227062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 169
Target Start/End: Original strand, 55728934 - 55728977
Alignment:
Q  126 cgtgaccgatccatcaccacttacgttgcgagcaaacataacct 169  Q
    ||||||||||| |||||||| ||||||||||||||||| |||||    
T  55728934 cgtgaccgatctatcaccacctacgttgcgagcaaacaaaacct 55728977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 170
Target Start/End: Complemental strand, 12469289 - 12469233
Alignment:
Q  114 catcaccaccatcgtgaccgatccatcaccacttacgttgcgagcaaacataacctc 170  Q
    |||||||||||||||||||  |||||||| ||  |||||||||| ||||| ||||||    
T  12469289 catcaccaccatcgtgaccagtccatcacaacccacgttgcgagaaaacaaaacctc 12469233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 43 - 175
Target Start/End: Original strand, 3302600 - 3302732
Alignment:
Q  43 agcaccacagaccaacacaaccaaagatccatcgaaaccataatagttcataagtaaagccaaatatgatccatcaccaccatcgtgaccgatccatcac 142  Q
    ||||||||| ||||| |||||||||||||||||||||| |||| |||| |||||  || | | |||||||  |||||||||||||||| ||||| |||||    
T  3302600 agcaccacataccaatacaaccaaagatccatcgaaactataacagttaataagcgaatctagatatgatgtatcaccaccatcgtgatcgatctatcac 3302699  T
Q  143 cacttacgttgcgagcaaacataacctccacca 175  Q
    ||| || ||||||||||||||||||||||||||    
T  3302700 cacctatgttgcgagcaaacataacctccacca 3302732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 35064 - 35120
Alignment:
Q  114 catcaccaccatcgtgaccgatccatcaccacttacgttgcgagcaaacataacctc 170  Q
    |||||||||||||||||| | |||||||||||| |||||||||| ||||||||||||    
T  35064 catcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctc 35120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 18269803 - 18269763
Alignment:
Q  43 agcaccacagaccaacacaaccaaagatccatcgaaaccat 83  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  18269803 agcaccacaaaccaacacaaccaaagatccatcgaaaccat 18269763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 90
Target Start/End: Original strand, 43276004 - 43276051
Alignment:
Q  43 agcaccacagaccaacacaaccaaagatccatcgaaaccataatagtt 90  Q
    ||||||||| |||||||||||||||||| |||||||| ||||| ||||    
T  43276004 agcaccacaaaccaacacaaccaaagattcatcgaaatcataacagtt 43276051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University